Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00200 ATGAGCGATCATTTGGTGTTGTTTGTAGACCGGCTTGTCCGGCCCATGCCGGTTGAGCCTTTGGCTCTTGAGCCGATGACTCCGGTGATTGAATCGCCGGCTGGGCCTTCTGGCTCTTCGGCGGAGGAGGACGATGACGGTGAGGAGGAGCCGCTGTTGCAGATGGGGGAGTGCAGGATTTGTCAGGAGGAAGATAGTATCAATAATCTCGAGAATCCATGCGCCTGTAGCGGTAGTCTAAAGTATGCTCATAGAAAGTGTGTCCAACGCTGGTGCAACGAAAAAGGAGACACAACCTGTGAAATATGTCATAAGACCTATGAACCTGGCTATATTACTCCACCACCTCGTCCACATCCCGAAGAAACTACTATTGATATAGGTGGAGGCTGGACACTTTCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTCTTGGCAATCGCAGAGGCAGAACGCCAATTCTTTGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAACGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTAATGGCCCTTTTACTTTTGAGGCACGCTCTTTCTGTCACAGATGCCGATGCTGATGATGATCCATCGACTTTTTTCTCTCTTTTCTTGCTTCGAGCAGCTGGCTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTACAACGGCGGCGACAAAGACAAGAGGCTGCAGCACTAGCGGCAACTCAAGTTGCGATTGTGCTACAATCCGGGCAGCATAGGGGTCTGCAATTTGCCATAGCACCAGCACCAACTGTGAATTCACACCCGGAACAAGTCTAG 831 0.497 MSDHLVLFVDRLVRPMPVEPLALEPMTPVIESPAGPSGSSAEEDDDGEEEPLLQMGECRICQEEDSINNLENPCACSGSLKYAHRKCVQRWCNEKGDTTCEICHKTYEPGYITPPPRPHPEETTIDIGGGWTLSGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADADDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAIVLQSGQHRGLQFAIAPAPTVNSHPEQV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00200 276 Pfam RING-variant domain 58 103 IPR011016 GO:0008270
Vifa4g00200 276 MobiDBLite consensus disorder prediction 24 51 - -
Vifa4g00200 276 CDD RING_CH-C4HC3_MARCH 58 104 - -
Vifa4g00200 276 SUPERFAMILY RING/U-box 57 108 - -
Vifa4g00200 276 ProSiteProfiles Zinc finger RING-CH-type profile. 50 110 IPR011016 GO:0008270
Vifa4g00200 276 FunFam RING/FYVE/PHD zinc finger protein 46 114 - -
Vifa4g00200 276 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 237 IPR033275 -
Vifa4g00200 276 Pfam Protein of unknown function (DUF3675) 109 227 IPR022143 -
Vifa4g00200 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 111 IPR013083 -
Vifa4g00200 276 SMART ringv_2 57 104 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00200 Vifa-Chr4 35240678 35242478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00200 57 104 C3H Transcription Factor Family AT2G37950 43.137 4.23e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00200 - - ahf:112734090 418.698