Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00197 ATGGACATGACCTCAAGAAACATAGATGTTGATTCTCAAACACCACAACCCAGTAACAATATCACACCAACAACCTTAAAGTCCTCACCTTTCACCAACGGCACACACAAACGCCACCTTACCACCACTACTCCATCACCCATGGTGGTTTCCTACAAAGAATGTCTCAAAAACCATGCTGCGTCTCTAGGTGGACATGCACTTGATGGCTGTGGAGAATTCATGCCTTCATCAACCGTTAATCCAAATGACCCTAGATCCCTCAAATGTGCTGCTTGTGGCTGTCACCGGAACTTCCACCGCCGTGAACCACAAGAACAACATATCATCACCACCACCATCACCAACACCACCGCCACCGCCACCGCCACCGCCACAACCGACACCCCCGCCAACGCCAACGCCACCGCCACCGCCAACCCCACTTTTCTTAACTGCATCTATACTCCACCATCAACAACCGTTCCACCACCACAACCACCACCGCCATTACAACTCCCCCACCGTGGCCCGATTAGTCAAAGCACAAGCCCAAGTCAAAGCACAAGCCCAACCTCAAGCCCGAGCCCAACATCAAGCCCATCCTCTCCACCACCACTCTCACATTTACCACCTTATCATCACCACTCTTCAGCACCTCACATGCTGCTAGCACTTGGAAATGCTTACTCAACACCACCACACTCCGATCATGATCAACATCAACACCAAAATCAACCCAATCAAAGGAATCTCAATTTTTCTTCATCAGTGATAAAGCTCGAGAACCCGAACAACAACAACAACGGCAACAGCAACAACTCAAGCGGTGGAAGAAAGAGGTACAGGACAAAATTCAGCAAGGAGCAGAAAGAGAAGATGTATGGATTTTCTGAGAAACTGGGTTGGAGAATGCAGAAGGGTGATGATGGAATGGTTCAGAAATTCTGCAATGACATTGGTGTTCCAAGAGGGGTTTTCAAGGTTTGGATGCACAATAACAAGAATTTGAGGAGGAAATCAGAATCTGAGGTTGGAGTTGCAACTCCAACAAATGGAAATAATAATAATAATAATAATAATAATCAGAACAACAACAATGTCATTCATATGGATGAAGATGGATGTGTCAATGTTCATGTTTCTTCTGTTAATGTTTTATCCTCTTAG 1149 0.4604 MDMTSRNIDVDSQTPQPSNNITPTTLKSSPFTNGTHKRHLTTTTPSPMVVSYKECLKNHAASLGGHALDGCGEFMPSSTVNPNDPRSLKCAACGCHRNFHRREPQEQHIITTTITNTTATATATATTDTPANANATATANPTFLNCIYTPPSTTVPPPQPPPPLQLPHRGPISQSTSPSQSTSPTSSPSPTSSPSSPPPLSHLPPYHHHSSAPHMLLALGNAYSTPPHSDHDQHQHQNQPNQRNLNFSSSVIKLENPNNNNNGNSNNSSGGRKRYRTKFSKEQKEKMYGFSEKLGWRMQKGDDGMVQKFCNDIGVPRGVFKVWMHNNKNLRRKSESEVGVATPTNGNNNNNNNNNQNNNNVIHMDEDGCVNVHVSSVNVLSS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00197 382 MobiDBLite consensus disorder prediction 190 204 - -
Vifa4g00197 382 MobiDBLite consensus disorder prediction 151 168 - -
Vifa4g00197 382 MobiDBLite consensus disorder prediction 338 361 - -
Vifa4g00197 382 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 52 103 IPR006456 -
Vifa4g00197 382 NCBIfam homeobox domain, ZF-HD class 272 329 IPR006455 -
Vifa4g00197 382 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 24 329 - -
Vifa4g00197 382 MobiDBLite consensus disorder prediction 1 44 - -
Vifa4g00197 382 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 52 103 IPR006456 -
Vifa4g00197 382 Gene3D - 257 334 - -
Vifa4g00197 382 MobiDBLite consensus disorder prediction 334 361 - -
Vifa4g00197 382 MobiDBLite consensus disorder prediction 148 280 - -
Vifa4g00197 382 MobiDBLite consensus disorder prediction 238 273 - -
Vifa4g00197 382 SUPERFAMILY Homeodomain-like 258 333 IPR009057 -
Vifa4g00197 382 MobiDBLite consensus disorder prediction 169 189 - -
Vifa4g00197 382 FunFam Zinc-finger homeodomain protein 2 259 333 - -
Vifa4g00197 382 Pfam ZF-HD protein dimerisation region 50 104 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00197 Vifa-Chr4 33920046 33921194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00197 3 368 ZF-HD Transcription Factor Family AT3G28920 36.585 2.67e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa4g00197 ZF-HD_dimer 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00197 - - tpra:123899747 382.874