Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00193 ATGGAAGAGAGAAATGGTTGTGAGAAACTTGATGAAGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTAGTTGGATTTTACCTCAAGAGAAAGATTCAACAACGCCCTCTTGCTATTGAGCTCATCAAACAGCTTGATATTTATAAATTTGATCCTTGGGATCTTCCAAAGTTGGCAAGTACTGGAGAGAAAGAGTGGTATTTTTACTGTCCAAGAGACAGGAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGGTGGGTTTTGGAAAGCTACTGGAACAGACAGACCTATTTATTCCTCAGAGGGTTCTAAGTGTATTGGTTTGAAGAAATCATTAGTTTTCTACAAAGGTAGAGCTGCTAAAGGAGCCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTTATTGACTCATCATCATCATCTCCAAGGAAATATGTAGACAAAACCATTCCTGCTAGTGAATCTTGGGCAATTTGCAGGATATTCAAGAAAACCAACGCAACAGCTCAAAGAGCACTCTCTCACTCATGGGTCCCTCCTTTACTTGAAACATCAACCTCCAACGTTCTAGCAAATGATGCAAACCACAGCCAATTTTGTTCACCAAACATGATGTTGACAAAGAAACCTAACTTTGCAAGCCAATTTTGTACTACTAATAACCACAATAACTCAACACAAAACTTAACCTCTTCTAGTGGCACAGCACTATGTCCTTTAGATGTTCCATCGTATCATAATAATAATAATAATCCAATCATTGATCCATTGATTTACAAACCCTTATACCGTTTACCGATTTCGAATGATCAAGACCTTAACCTTAGCACCGGCTTAGTATTCTCTTCTCCTCTTGAAACATCTTGTAACAAAACTTCAATGGATGTTTCTTCCTTGCTATTGGGCATGTCATGTGAAGGAACAACCTCAAACTACGTTGACCATTACAATAATGGATATCCATTGATGGCTAATAGTATTCCGAATGTGAATGTGCAAGAGTTGGAGAGAGTGAGATCCATTGGATTCCCATTTAGTGTGCCTTTTAATATTGGTGAAGCATGGAAGTCAAGTCTTGTTTGGGATGCCGCTTCTTGTACTTCTGATGAACCCTCTAGCTATTCTACTACCAAGTGTTACACTTAG 1176 0.3886 MEERNGCEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRGGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGAKTDWMMHEFRLPSLIDSSSSSPRKYVDKTIPASESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLANDANHSQFCSPNMMLTKKPNFASQFCTTNNHNNSTQNLTSSSGTALCPLDVPSYHNNNNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPLETSCNKTSMDVSSLLLGMSCEGTTSNYVDHYNNGYPLMANSIPNVNVQELERVRSIGFPFSVPFNIGEAWKSSLVWDAASCTSDEPSSYSTTKCYT 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00193 391 ProSiteProfiles NAC domain profile. 14 174 IPR003441 GO:0003677|GO:0006355
Vifa4g00193 391 Gene3D NAC domain 23 179 IPR036093 GO:0003677|GO:0006355
Vifa4g00193 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 234 - -
Vifa4g00193 391 SUPERFAMILY NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Vifa4g00193 391 FunFam NAC domain-containing protein 35 23 177 - -
Vifa4g00193 391 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00193 Vifa-Chr4 32790407 32792559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00193 1 263 NAC Transcription Factor Family AT1G26870 59.926 2.62e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa4g00193 NAM 4.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00193 - - vra:106768003 481.485