Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00187 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGTCAGGAAACAACATCAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGAGAGTAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCAATCCCGAGACGTGGCATTGGCAACAGCAGCAAAATTTATAATGCTGAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGAAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATAATTTTGAGCTTATTCCATTTGGGTCTGGTAGAATAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1035 0.3865 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQSGNNISEKAYEDGRTMVESKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKQSRDVALATAAKFIMLNIFVAGTDTSTYTLEWEMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHNFELIPFGSGRIICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00187 344 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa4g00187 344 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa4g00187 344 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 131 340 - -
Vifa4g00187 344 SUPERFAMILY RING/U-box 13 63 - -
Vifa4g00187 344 Pfam Cytochrome P450 138 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 MobiDBLite consensus disorder prediction 81 124 - -
Vifa4g00187 344 SUPERFAMILY Cytochrome P450 135 337 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 FunFam Geraniol 8-hydroxylase 87 337 - -
Vifa4g00187 344 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa4g00187 344 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa4g00187 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 62 IPR013083 -
Vifa4g00187 344 PRINTS P450 superfamily signature 198 209 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS P450 superfamily signature 275 284 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS P450 superfamily signature 145 162 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS P450 superfamily signature 284 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS E-class P450 group I signature 197 215 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS E-class P450 group I signature 284 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS E-class P450 group I signature 154 180 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS E-class P450 group I signature 134 151 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS E-class P450 group I signature 238 262 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 PRINTS E-class P450 group I signature 274 284 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 Gene3D Cytochrome P450 63 343 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00187 344 MobiDBLite consensus disorder prediction 94 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00187 Vifa-Chr4 31662797 31664780 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00187 138 340 Cytochrome P450 AT2G45550 55.665 1.68e-84 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00187 - - qsu:111996205 295.434