Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00186 ATGATTATGAACTTCGATCGTTTTTCGGGACTACCTGATAACGGAACATTCACTATCGGCTTCACTCCATCAGACACTGATAATCGATTATTCACGTTAGGCATTTGGTTTGCTAGCCTTCCAGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCTACATCTCAAGAAGCAATTTTGGAGCTTGACACAACAGGAAACCTCGTCCTCGTCGACAAAAAAGTCACCATATGGGCCTCAAACACATCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCTGGTAACTTCATCCTTCACAGCACAAACAACCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCCTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTACAGATCAGGACAAGTAACTTTTCGCAGCTTCTAGGAACAGTTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTTGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAACAAGATAATACATTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCACCAGAATGGGTTAGTAATCGACCGATAACCGTAAAAGCAGATGTTTACAGCTATGGAATGCTTCTTTTCTTATTTTTTTGGTGTTTTGTTTAG 2112 0.3849 MIMNFDRFSGLPDNGTFTIGFTPSDTDNRLFTLGIWFASLPGDRTFVWSPNRNSPTSQEAILELDTTGNLVLVDKKVTIWASNTSNANVESATMSESGNFILHSTNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIRTSNFSQLLGTVGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNFVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLFLFFWCFV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00186 703 FunFam Protein kinase superfamily protein 578 653 - -
Vifa4g00186 703 SUPERFAMILY Protein kinase-like (PK-like) 482 699 IPR011009 -
Vifa4g00186 703 Gene3D Transferase(Phosphotransferase) domain 1 578 701 - -
Vifa4g00186 703 FunFam S-receptor-like serine/threonine-protein kinase 471 577 - -
Vifa4g00186 703 PIRSF SRK 8 697 IPR024171 GO:0004674
Vifa4g00186 703 SMART blect_4 4 117 IPR001480 -
Vifa4g00186 703 Pfam Protein kinase domain 505 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00186 703 Gene3D Phosphorylase Kinase; domain 1 466 577 - -
Vifa4g00186 703 ProSiteProfiles Bulb-type lectin domain profile. 1 115 IPR001480 -
Vifa4g00186 703 SUPERFAMILY alpha-D-mannose-specific plant lectins 45 119 IPR036426 -
Vifa4g00186 703 CDD B_lectin 11 117 IPR001480 -
Vifa4g00186 703 PANTHER OS07G0415500 PROTEIN 14 695 - -
Vifa4g00186 703 Pfam S-locus glycoprotein domain 225 305 IPR000858 GO:0048544
Vifa4g00186 703 SMART serkin_6 502 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00186 703 Coils Coil 703 703 - -
Vifa4g00186 703 Gene3D - 10 116 IPR036426 -
Vifa4g00186 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vifa4g00186 703 ProSiteProfiles Protein kinase domain profile. 502 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00186 703 Pfam D-mannose binding lectin 45 132 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00186 Vifa-Chr4 31378894 31381324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00186 448 696 Receptor kinase-like Gene Family AT5G20050 43.609 3.77e-61 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g00186 Pkinase 7.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00186 - - tpra:123904109 1261.13