Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00166 ATGAATGACATTTTCCCTAACGATGAAAATTTCAACAACTATGTTCTTCCATGTCCAAAACGACAAAAACTAGGTTATGAAGAAGAAAACCAACAAGAGCTTTTGAACTCATGCAATTATTTTGTGGATGAGTTTATAGCGAACCCTTTTACTACTTCCTTTGAAGCGGAAGCATTTTCGGGTTCGAATATGGTTGATGTTAATGTGCAATGTGAGAAGAAGGTTAGTGAAAGGAGTATCTCGACTCAGAGTATTGCGGCGAGAGAAAGAAGAAGGAAGATATTTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCTAAGATGAACACTGCTGAGATGCTTAATGCTGCTTCTAATTATGTTAGGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACTTTCAGCAAGGAAGAAAAGGAACCTCCTCCTCCAAGTGAAGAACTACACAAACTAGTTATTTCTCCTTTTGTTCAAGAGAAGTTGTATTCAGAAGAAAAGTGTTTTATTTCAAAAGAGATTGTCACCACATTGAGCAACAATGTTGATGTTAGGTCAAAACCTCCAATCCTTCAAGGTCTTAAACAACTTGTTGGAGCATAG 618 0.3786 MNDIFPNDENFNNYVLPCPKRQKLGYEEENQQELLNSCNYFVDEFIANPFTTSFEAEAFSGSNMVDVNVQCEKKVSERSISTQSIAARERRRKIFEKTQELGKLVPGGPKMNTAEMLNAASNYVRFLQAQVGMLQLMETFSKEEKEPPPPSEELHKLVISPFVQEKLYSEEKCFISKEIVTTLSNNVDVRSKPPILQGLKQLVGA 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00166 205 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 139 IPR036638 GO:0046983
Vifa4g00166 205 Gene3D - 75 146 IPR036638 GO:0046983
Vifa4g00166 205 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 47 178 IPR045843 GO:0003700|GO:0006355
Vifa4g00166 205 SMART finulus 84 133 IPR011598 GO:0046983
Vifa4g00166 205 Pfam Helix-loop-helix DNA-binding domain 83 128 IPR011598 GO:0046983
Vifa4g00166 205 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00166 Vifa-Chr4 27704456 27705245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00166 38 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 42.012 3.76e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g00166 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00166 - - psat:127131095 313.153