Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g00165 | ATGGCTGATCGTCAGAAAACTGGTCTTGGCGACAGTAGGGATATCGAGCAGGCAATTACATCTCTTAAAAAAGGTTCATATCTGCTAAAGTATGGACGAAGAGGGAAGCCAAAGTTCTGCCCTTTTAAGCTTTCCAATGATGAGTCTCTACTCATATGGTACTCTGGCAAGGAAGAAAAACAAATTAAGCTCAGTACTGTTTCAAAGATCATTCCTGGGCAGCGAACTGCAACATTTCAGCGGTATCCTCGACCAGAAAAGGAGTATCAGTCATTCTCTCTTATATACAATGATAGGTCCTTGGATTTGATCTGCAAAGACAAAGATGAAGCCGAAATCTGGTTTGCTGGTCTGAAAGCATTAATTACCCGCGGTAACTATCGCAAGTGGGGATATGAATCAAGACCTGAAAGTCTGTATTCTGATAGTCCAAAGTCTGGCACAAGAAGATCCATTCCATCATTTGCACCATATGACCCCAGAGATATCGACAGAGTTTCTTTTCAAAATTCTTCGCCAAATAGATGGGTAAAGGCTTTCTCTGAAATAATTTCATACACTGCTGCGCCTAGCAAGAGCTCCAGTCAAGCTGAATCAATTACCAATTCCTCTATGTCCTCTGGATCCATGGATAACTCAAGCAATAGAAATTCTGCATCTGAGGCGGTTCGAGTTAGTTTATCCAGTGCTATAAGTTCATCCAGCCAGGGTTCCTGTCAAGAAGATTTTGATGCTTTAGGTGATGTTTTTATTTGGGGAGAAGGTATCTATGATGGAATTCTTGGTGGTGGTCTGCATAGAGTTGGAAACGTATCTTTTTCAGAGATGGATGCATTCCTTCCCAAGGCATTGGAATCAAAAGTGGTTCTAGATGTTCATAGCATTGCATGTGGCTATAAACACGCTGTTCTAGTTACCAAACAGGGAGAAACATTTAGCTGGGGGGAGGAGTCAGGAGGAAGGCTTGGGCACGGTGCCGAAGTGGATGTTCTTAACCCCAAGCTCATTGACACTCTTAGTGGCATGAACATTGAGTTAGTAGCATGTGGAGAATATCATACATGTGCTGTTACTTATTCTGGGGATCTTTATACCTGGGGCGATGGTACTCACAATTCTGGGTTACTTGGGCATGGAGATGAAGTTAGTCACTGGATTCCTAAGAAAGTAGGTGGTGCATTGGAAGGATTACGTGTATCATATGTGTCCTGCGGTCCTTGGCACACAGCTATTGTTACATCAGCTGGGCAGTTGTTTACATTTGGTGATGGAACTTTTGCCGCCTTAGGCCATGGAGATCATAGCAGTTCAAGTATTCCACGGGAAGTAGAAACTTTGAAAGGGTTGAGAACAACCAGGGTTTCATGTGGTGTTTGGCACACTGCTGCCGTTGTTGAGGTGATAGATGAATCTTTGGAGTCTTCTACACAGTCATCTAGTGGAAGACTGTTCACCTGGGGTGATGGCGATAAAGGCCAACTTGGAATTGTTGATAAGAAACCTAGACTAGTTCCAGTGTGTGTAATTGCATTGTCTAACAAAAACATTTGTCGTGTAGCTTGTGGCCACAGTCTTACAGTTGCATTGACAACATCGGGACATGTGTATACAATGGGCAGTACAGCTTACGGACAACTTGGTTGTCCTTCAGCAAGTGGAGTGGTTCCTGCACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACTTCCAAGGCAGAGGTTTTCACATGGGGGAAGGGTTTAAATGGGCAATTAGGTCATGGTGACAACGGTCACAGGAATAAGCCCACATTTGTCCAATTTTTAAAAGATAAGCAAGTGAAGAGTGTTTTTTGTGGTTCAAACTTTACTGCTGTTGTTTGCCTTCATAAATGGATACCGAGTGTTGATCATTCTGCATGTTCAGCCTGTCGCAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAATTCATGCACCAGCAAGAAATCTATTAAGGCTTCCCTTGCTCCAAATTCCAACAAAACATATCGTGTTTGTGATGACTGTTATTATAAACTTAAGAAAACCGCTGAATCAGTATCCTTGCAAACTCCGAGCTGGAAAAGTGTCAGTTCGCAAGACAGTAAGGCCCCTAAAACACAGGGAACACTATTAAAACTTTCTTCATTCGGTTCTATTGTTCAATCAGAAAGCAGTCAGTCAAAGCTTCCAGATTCTCTTGATAGCCATATTTTTCCAGCTTTGAATGGAAAATTACAGTTGGGGGGTTTTGTTCTTTCAAAATCATCGAACTCTCTTTCCGTGGAATCTAGGAAATACATGTCTGTTTCTGAGCTTGCTACAAGAATATCTTGTCAGTCAACTTCTCCAGTTTCATCAAAGTCAAGCCCACGACAATCTTGTGAAGATATTATACATGAAGATTTAAAACACAGAAATGGTATTCTAAGTCACGAAGTTATAAGTTTAAAAGCACAAGTTGAAGAACTTACTCAGAAGTCAAAAAGTCTCGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGGCTGAAGTAGCTGCGGATGAAGCTGGAAAGTGTAAATCTGCAAAAGAGGTTATAAAGTCATTGACAACTCAGTTGAAGGAAATGATGCAAAGACTGCCAGAAGGACATGATGCTGACTTAAGCACCGATTCCTATGCTGAAACCACTAATATGATTGTAGATCAATCCATAGATGAGAGTCATATGACAAACATGATCACTCACAAAAATGAAAGTGGAAGCAATGCAGAAAAGGTGGTATTGCCTAATGGCGCCACAACACAAAGTGGAAAGGCAGAATGGGTGGTGCAAGATGAACCAGGTGTGTATGTAAGTTTGTCGTCCCTTCCAGGTGGTGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGAAGGCATTTCACAGAAGAAGAAGCTGAAAAGTGGTGGGCTGAAAATGGTCCCAAAGTATTGGAGCGGCACAATGTAGTTGCCCTGTAG | 3057 | 0.4184 | MADRQKTGLGDSRDIEQAITSLKKGSYLLKYGRRGKPKFCPFKLSNDESLLIWYSGKEEKQIKLSTVSKIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKALITRGNYRKWGYESRPESLYSDSPKSGTRRSIPSFAPYDPRDIDRVSFQNSSPNRWVKAFSEIISYTAAPSKSSSQAESITNSSMSSGSMDNSSNRNSASEAVRVSLSSAISSSSQGSCQEDFDALGDVFIWGEGIYDGILGGGLHRVGNVSFSEMDAFLPKALESKVVLDVHSIACGYKHAVLVTKQGETFSWGEESGGRLGHGAEVDVLNPKLIDTLSGMNIELVACGEYHTCAVTYSGDLYTWGDGTHNSGLLGHGDEVSHWIPKKVGGALEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFAALGHGDHSSSSIPREVETLKGLRTTRVSCGVWHTAAVVEVIDESLESSTQSSSGRLFTWGDGDKGQLGIVDKKPRLVPVCVIALSNKNICRVACGHSLTVALTTSGHVYTMGSTAYGQLGCPSASGVVPARVEDKIADSFIEDIACGSYHVAVLTSKAEVFTWGKGLNGQLGHGDNGHRNKPTFVQFLKDKQVKSVFCGSNFTAVVCLHKWIPSVDHSACSACRNPFNFRRKRHNCYNCGLVFCNSCTSKKSIKASLAPNSNKTYRVCDDCYYKLKKTAESVSLQTPSWKSVSSQDSKAPKTQGTLLKLSSFGSIVQSESSQSKLPDSLDSHIFPALNGKLQLGGFVLSKSSNSLSVESRKYMSVSELATRISCQSTSPVSSKSSPRQSCEDIIHEDLKHRNGILSHEVISLKAQVEELTQKSKSLEAELERTSKQLKEVAEVAADEAGKCKSAKEVIKSLTTQLKEMMQRLPEGHDADLSTDSYAETTNMIVDQSIDESHMTNMITHKNESGSNAEKVVLPNGATTQSGKAEWVVQDEPGVYVSLSSLPGGGNELKRVRFSRRHFTEEEAEKWWAENGPKVLERHNVVAL | 1018 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00165 | 1018 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 309 | 357 | IPR000408 | - | |
| Vifa4g00165 | 1018 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 416 | 464 | IPR000408 | - | |
| Vifa4g00165 | 1018 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 480 | 529 | IPR000408 | - | |
| Vifa4g00165 | 1018 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 532 | 581 | IPR000408 | - | |
| Vifa4g00165 | 1018 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 586 | 633 | IPR000408 | - | |
| Vifa4g00165 | 1018 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 360 | 411 | IPR000408 | - | |
| Vifa4g00165 | 1018 | MobiDBLite | consensus disorder prediction | 195 | 219 | - | - | |
| Vifa4g00165 | 1018 | SUPERFAMILY | PH domain-like | 14 | 122 | - | - | |
| Vifa4g00165 | 1018 | PRINTS | Chromosome condensation regulator RCC1 signature | 580 | 601 | IPR000408 | - | |
| Vifa4g00165 | 1018 | PRINTS | Chromosome condensation regulator RCC1 signature | 311 | 327 | IPR000408 | - | |
| Vifa4g00165 | 1018 | PRINTS | Chromosome condensation regulator RCC1 signature | 418 | 432 | IPR000408 | - | |
| Vifa4g00165 | 1018 | PRINTS | Chromosome condensation regulator RCC1 signature | 402 | 418 | IPR000408 | - | |
| Vifa4g00165 | 1018 | PRINTS | Chromosome condensation regulator RCC1 signature | 522 | 540 | IPR000408 | - | |
| Vifa4g00165 | 1018 | PRINTS | Chromosome condensation regulator RCC1 signature | 361 | 377 | IPR000408 | - | |
| Vifa4g00165 | 1018 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 58 | 893 | - | - | |
| Vifa4g00165 | 1018 | Gene3D | - | 182 | 371 | IPR009091 | - | |
| Vifa4g00165 | 1018 | Gene3D | - | 372 | 475 | IPR009091 | - | |
| Vifa4g00165 | 1018 | Gene3D | - | 476 | 643 | IPR009091 | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 585 | 636 | IPR000408 | - | |
| Vifa4g00165 | 1018 | SUPERFAMILY | FYVE/PHD zinc finger | 637 | 716 | IPR011011 | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 416 | 467 | IPR000408 | - | |
| Vifa4g00165 | 1018 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 454 | 464 | IPR000408 | - | |
| Vifa4g00165 | 1018 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 218 | 469 | - | - | |
| Vifa4g00165 | 1018 | Coils | Coil | 836 | 874 | - | - | |
| Vifa4g00165 | 1018 | Pfam | Pleckstrin homology domain | 16 | 122 | IPR001849 | - | |
| Vifa4g00165 | 1018 | Coils | Coil | 878 | 898 | - | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | BRX domain profile. | 959 | 1014 | IPR013591 | - | |
| Vifa4g00165 | 1018 | Pfam | Transcription factor BRX N-terminal domain | 873 | 900 | IPR027988 | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 481 | 532 | IPR000408 | - | |
| Vifa4g00165 | 1018 | MobiDBLite | consensus disorder prediction | 135 | 156 | - | - | |
| Vifa4g00165 | 1018 | Gene3D | - | 13 | 129 | IPR011993 | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 533 | 584 | IPR000408 | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 309 | 360 | IPR000408 | - | |
| Vifa4g00165 | 1018 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 295 | 305 | IPR000408 | - | |
| Vifa4g00165 | 1018 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 958 | 1013 | IPR013591 | - | |
| Vifa4g00165 | 1018 | Pfam | FYVE zinc finger | 637 | 703 | IPR000306 | GO:0046872 | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 641 | 703 | IPR017455 | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 247 | 308 | IPR000408 | - | |
| Vifa4g00165 | 1018 | SUPERFAMILY | RCC1/BLIP-II | 246 | 638 | IPR009091 | - | |
| Vifa4g00165 | 1018 | SMART | fyve_4 | 633 | 704 | IPR000306 | GO:0046872 | |
| Vifa4g00165 | 1018 | CDD | PH_PLC_plant-like | 13 | 123 | - | - | |
| Vifa4g00165 | 1018 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 361 | 415 | IPR000408 | - | |
| Vifa4g00165 | 1018 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 644 | 713 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa4g00165 | Vifa-Chr4 | 27513735 | 27526094 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00165 | 957 | 1015 | Major Intrinsic Protein MIP | AT1G31880 | 52.542 | 2.37e-15 | 77.0 |