Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00162 ATGGCAATAAAGTCTAACTGTAACATTAAATTAGAATATGATATGGTTCAGACAAAGCAAGATTGCTTATGTGTTTTGGTTTCTTTCAACCAAAGTTCTTGCTGGAAGAAGAAGCTTCCACTATCTTATGGAAGAAATGATCAAGTAGTAAAAGGAATTTCTGTCATGAAATTGATGAAAAACGATCCTTTTTCTTCCATTTCAAATCAAAAGAAAGATCATGAAACTTTGATTATTGTAATTTCGGTTCTTTTAGGAAGCTCTATGCTTGTCATTGTGACATTACTTGGAGCAATGTTTTTTGGGTTTCCTTACAACCGCAAGATGATAAAAAGTTGTAGAACCAACAAAAATGTTGTTGACAATAACTTGCGCAATTTTAGCTTCAAGGAAATCGTTGAAGCAACGAGTAACTTCAGAGAGGAACTTGGAAGAGGGTCTTGTAGCGTTGTGTACAAAGGAACAATAGAGATGATGGTTGATGTAGCCGTTAAGAAACTTGATAAGTTGCTTCAAGATAGTGATAAGGAATTTCAGACCGAAATGAGTGTGATAGGACAAACTCATCACAGAAACCTTGTTCGTCTTCTTGGATATTGCAATGAGGGACAACATCGGATTTTGGTTTACGAGTTAATGAGCAACGGAACTTTAGCAAGCTTCCTTTTCACCTCTTTAAAACCAAATTGGAACCAACGATTCCAAATTGTTCTTGGAATTGCTAGAGGTCTTGTATACTTGCATGAAGGATGTTGCACCCAAATCATCCATTGTGATATTAAACCCCAAAATATACTTCTAGATGATCACTACAATGCTAGGATTTCAGATTTTGGGTTAGCAAAGCTATTGCTGATTAATCAGAGCCACACCGAAACTGGAATTAGAGGAACCAAAGGGTATGTTGCGCCAGATTGGTTTAGGAGTGCACCAATCACTGCAAAAGTTGATACTTATAGTTTTGGTGTATTGTTGTTAGAGATCATTTGTTGTAGGAAAAATGTAGAGAAGGAATTTGTTAATGAAGAACAAGGGATTTTAACTGATTGGGCTTATGATTGCTATAAGACTAAAAGACTTGACAATCTCTTAGAAAATGATAATGAGGTCAGAAATGACATGATGAGTTTGGAAAAGTTAGTCATGATTGTTATTTGGTGTATTCAAGAAGATCCTTCTCTTAGGCCAACAATGAAGGAGGTTTTACTGATGTTAGAAGGAATAGTCGAAGTTGTTGTTCCCCGAAGTCCCTATCTTTATGGTTCTGTAAGTTGTAATTAA 1281 0.3575 MAIKSNCNIKLEYDMVQTKQDCLCVLVSFNQSSCWKKKLPLSYGRNDQVVKGISVMKLMKNDPFSSISNQKKDHETLIIVISVLLGSSMLVIVTLLGAMFFGFPYNRKMIKSCRTNKNVVDNNLRNFSFKEIVEATSNFREELGRGSCSVVYKGTIEMMVDVAVKKLDKLLQDSDKEFQTEMSVIGQTHHRNLVRLLGYCNEGQHRILVYELMSNGTLASFLFTSLKPNWNQRFQIVLGIARGLVYLHEGCCTQIIHCDIKPQNILLDDHYNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSAPITAKVDTYSFGVLLLEIICCRKNVEKEFVNEEQGILTDWAYDCYKTKRLDNLLENDNEVRNDMMSLEKLVMIVIWCIQEDPSLRPTMKEVLLMLEGIVEVVVPRSPYLYGSVSCN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00162 426 ProSiteProfiles Protein kinase domain profile. 137 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00162 426 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 213 413 - -
Vifa4g00162 426 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 19 414 - -
Vifa4g00162 426 FunFam S-receptor-like serine/threonine-protein kinase 106 212 - -
Vifa4g00162 426 Gene3D Phosphorylase Kinase; domain 1 102 212 - -
Vifa4g00162 426 SUPERFAMILY Protein kinase-like (PK-like) 122 406 IPR011009 -
Vifa4g00162 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vifa4g00162 426 Gene3D Transferase(Phosphotransferase) domain 1 213 413 - -
Vifa4g00162 426 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00162 426 Coils Coil 360 380 - -
Vifa4g00162 426 SMART serkin_6 137 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00162 Vifa-Chr4 25684415 25685695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00162 69 410 Receptor kinase-like Gene Family AT5G45780 38.286 2.10e-74 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g00162 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00162 - - mtr:25487002 728.783