Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00160 ATGGCTTTCTTTCCATCAAATTTCATGCTTCAAACTTCTCATCAAGATGACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCTCAAGATTATCATGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCCGGTATAGAACTCGGAGAAGAACCGAATGTCGAGGAAGAATTATCGGACGATGGATCGCAGTTAGGAGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAAAGCTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAGGGCTCTTGGACTTCAACCAAGACAAATTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTTTGATGTTCTCAAAAGACAGTATGATTCTGTTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGATATTGGCACTGAAAAATAGAGAACCAACAGAATCAATCAACCTAAACAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGAAATCAAGTTGGATATTTCAACTAGGACACAAGGAGCTATTGATAGTCCTCTATCCACTCAACAACAAACAAGCATAAACCTCTTTCCATCTTCTTCTAGACCAACACTAGTTCCTCATCAACTCTTTCAAACCAATTCAACAAGACAAGACATTAATCATTGCCAAAAGATTGATCACATGGTTAAAGAAGAGAGTTTGAGTAACATGTTTTCGGCCATCGATGATCAATCCGGATTATGGCCATGGTTGGAGCAACAACACTTCAATTGA 858 0.3916 MAFFPSNFMLQTSHQDDHHQPPPSLNSIITSCAPQDYHGGVSFLGKRSMSFSGIELGEEPNVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDFDVLKRQYDSVKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSEIKLDISTRTQGAIDSPLSTQQQTSINLFPSSSRPTLVPHQLFQTNSTRQDINHCQKIDHMVKEESLSNMFSAIDDQSGLWPWLEQQHFN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00160 285 CDD homeodomain 76 132 IPR001356 GO:0003677
Vifa4g00160 285 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Vifa4g00160 285 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Vifa4g00160 285 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
Vifa4g00160 285 Coils Coil 130 171 - -
Vifa4g00160 285 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Vifa4g00160 285 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Vifa4g00160 285 MobiDBLite consensus disorder prediction 172 195 - -
Vifa4g00160 285 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Vifa4g00160 285 SMART HOX_1 74 135 IPR001356 GO:0003677
Vifa4g00160 285 SUPERFAMILY Homeodomain-like 69 133 IPR009057 -
Vifa4g00160 285 Gene3D - 68 137 - -
Vifa4g00160 285 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 250 IPR045224 GO:0003700
Vifa4g00160 285 FunFam Homeobox-leucine zipper protein ATHB-13 68 135 - -
Vifa4g00160 285 MobiDBLite consensus disorder prediction 179 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00160 Vifa-Chr4 24447459 24449160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00160 1 285 Homeobox Transcription Factor Family AT1G69780 62.752 3.44e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g00160 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00160 K09338 - gmx:100801479 466.077