Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00159 ATGGCTTTCTTTCCATCAAATTTCATGCTTCAAACTTCTCATCAAGATGACCATCATCAACCTCCACCTTCACTCAACTCAATTATAACCTCATGTGCACCTCAAGATTATCATGGAGGAGGAGTATCCTTTTTAGGAAAGAGATCTATGTCATTTTCCGGTATAGAACTCGGAGAAGAACCGAATGTCGAGGAAGAATTATCGGACGATGGATCGCAGTTAGGAGAGAAGAAGAGAAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAAAGCTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTTGCAAGGGCTCTTGGACTTCAACCAAGACAAATTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTTTGATGTTCTCAAAAGACAGTATGATTCTGTTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGATATTGGCACTGAAAAATAGAGAACCAACAGAATCAATCAACCTAAACAAAGAAACAGAAGGATCAAGCAGCAACAGAAGTGAAAACAGTTCAGAAATCAAGTTGGATATTTCAACTAGGACACAAGGAGCTATTGATAGTCCTCTATCCACTCAACAACAAACAAGCATAAACCTCTTTCCATCTTCTTCTAGACCAACACTAGTTCCTCATCAACTCTTTCAAACCAATTCAACAAGACAAGACATTAATCATTGCCAAAAGATTGATCACATGGTTAAAGAAGAGAGTTTGAGTAACATGTTTTCGGCCATCGATGATCAATCCGGATTATGGCCATGGTTGGAGCAACAACACTTCAATTGA 861 0.3926 MAFFPSNFMLQTSHQDDHHQPPPSLNSIITSCAPQDYHGGGVSFLGKRSMSFSGIELGEEPNVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDFDVLKRQYDSVKADNDALQAQNQKLQTEILALKNREPTESINLNKETEGSSSNRSENSSEIKLDISTRTQGAIDSPLSTQQQTSINLFPSSSRPTLVPHQLFQTNSTRQDINHCQKIDHMVKEESLSNMFSAIDDQSGLWPWLEQQHFN 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00159 286 ProSitePatterns 'Homeobox' domain signature. 107 130 IPR017970 GO:0000981|GO:0006355
Vifa4g00159 286 Coils Coil 131 172 - -
Vifa4g00159 286 SUPERFAMILY Homeodomain-like 70 134 IPR009057 -
Vifa4g00159 286 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Vifa4g00159 286 MobiDBLite consensus disorder prediction 173 196 - -
Vifa4g00159 286 Gene3D - 69 138 - -
Vifa4g00159 286 Pfam Homeodomain 77 130 IPR001356 GO:0003677
Vifa4g00159 286 SMART HOX_1 75 136 IPR001356 GO:0003677
Vifa4g00159 286 FunFam Homeobox-leucine zipper protein ATHB-13 69 136 - -
Vifa4g00159 286 MobiDBLite consensus disorder prediction 180 196 - -
Vifa4g00159 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 251 IPR045224 GO:0003700
Vifa4g00159 286 CDD homeodomain 77 133 IPR001356 GO:0003677
Vifa4g00159 286 Pfam Homeobox associated leucine zipper 132 172 IPR003106 GO:0006355|GO:0043565
Vifa4g00159 286 PRINTS Lambda-repressor HTH signature 103 112 IPR000047 GO:0003677
Vifa4g00159 286 PRINTS Lambda-repressor HTH signature 112 128 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00159 Vifa-Chr4 24447459 24449160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00159 1 286 Homeobox Transcription Factor Family AT1G69780 62.542 3.12e-116 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g00159 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00159 K09338 - gmx:100801479 461.455