Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00154 ATGATGGAATTGAGAGGGCTCTCACTCTCAGAGCTAAGTATAGTAAAGCTATATGACTCGGATGGAGAGCGGTCGTACTGTGACAACTGCAAGACGTCAATATTTGCCCTCCACAAACACTGTCAGACATGCAAATCTGACTTTTGTCTCGCCTGTTGTCGTGACTTTTGTGATGCGCAGCTTCGAGGTGGTGCTGATCCGATTGAGTCACATGTTACTGCCAAGTTTGGGGTTCACAAACGGCCAAGATCTAATTGGGATGTGGATAGTGATGACATGGTTTTCTGTGAAGGGGTTCTTGAACTGAGAAGCTTCTATCCTCCAAATCACATTACTGATTTGCTAGATGAAGCAGAAAAACTTGTAGACAAACACAAGCATCACAAGCCTATGATTGCAGACGAGACTTATAAGAACTTGCATTCATGTTTGAATCGTAAGGCAGCATCTCGTGAAGGGTCAAATGACAACAATATATATTGCCCGGAGGCTAAAATTGCATATCCTGAGGATTTACTACAATTTCAATGGCACTGGAGAAAAGGGGAGCCAGTAATTGTCAGGAACCTGCTTGGAGGTGGTACATTTAGTTCATTATTATGGGAACCATCACACATGAGCCATGCAATCAGTCAGAAGCATGAGACTGTGAAGGCCATTAATTGCTTAAGTTTTTGCGAGCCTCACATGTTGAAGTTGAAAGATTGGCCTCCTTCTGAATCATTTAAGGAATGTTTACCTATTAATTTTAAGAACTTCGTATCTTACTTGCCGTATAAAGAATACACACATCCTGTAAGTGGTTCTCTTAACCTTGCCGTGAAGTTGCCTGATGGTTGTCTGAAGCCAGACATGGGGCCAAAAGCATACATTGCTTATGGAGTTGCTAAGGAGCTTGGGCGCGGTGATTCTGTGACAAAGCTCCATTGTGACATGTCTGATGCAGTAAACGTGTTGACTCATGTTGCTAAAGTGAAATTGGGTTCTGAGAATGTTACTGCCATTGAGAAATTGATGCCAAAGAACCTTGAGCAAGACAAGAGGGAATTACATGATATTCATCAGGATGGGGAGGCTAATGATGATGGCACATCTGGGTCTAAGCTCAAAGAAGTTGAAAAAGGTACAGTGGAGCAAGGAGATAGTTTGTTGGATGCAGTGGAATCTTTGGATGGTGCTCTCTGGGATATTTTTCAAAGAAAGGATGTACCTATATTGGAGGGATATTTATACAAGCATTTCGGAGAGTTTAGTCATTTTGACTGCCATCCTTTAACGAAGGTTACTCACCCCATCCATGATCAGACATTTTATCTGACTATGGAGCATAAGAAGAAGCTTAAGCAGGAGTGTGGAATTGAGCCCTGGACCTTCACTCAGAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCTCATCAAGTCAGAAATCTGAACTCATGCACCAAGGTTGCACTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGCATCCGTTTGACAGAAGAATTCCGCAAACTTCCGAAAAATCACGGGTCCAACGAGGAAAAATTGCAGGTGAAGAAAATGATTATACATGCTGTGGACGATGCAGTCAAAAAGTTGAAAAACTCGACATGTGCTAGCGGAAAACAAGAAGCAATTATTTTGCCTAATTAG 1662 0.4224 MMELRGLSLSELSIVKLYDSDGERSYCDNCKTSIFALHKHCQTCKSDFCLACCRDFCDAQLRGGADPIESHVTAKFGVHKRPRSNWDVDSDDMVFCEGVLELRSFYPPNHITDLLDEAEKLVDKHKHHKPMIADETYKNLHSCLNRKAASREGSNDNNIYCPEAKIAYPEDLLQFQWHWRKGEPVIVRNLLGGGTFSSLLWEPSHMSHAISQKHETVKAINCLSFCEPHMLKLKDWPPSESFKECLPINFKNFVSYLPYKEYTHPVSGSLNLAVKLPDGCLKPDMGPKAYIAYGVAKELGRGDSVTKLHCDMSDAVNVLTHVAKVKLGSENVTAIEKLMPKNLEQDKRELHDIHQDGEANDDGTSGSKLKEVEKGTVEQGDSLLDAVESLDGALWDIFQRKDVPILEGYLYKHFGEFSHFDCHPLTKVTHPIHDQTFYLTMEHKKKLKQECGIEPWTFTQKLGDAVFIPAGCPHQVRNLNSCTKVALDFVSPENVGECIRLTEEFRKLPKNHGSNEEKLQVKKMIIHAVDDAVKKLKNSTCASGKQEAIILPN 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00154 553 Gene3D Cupin 159 515 - -
Vifa4g00154 553 ProSiteProfiles JmjC domain profile. 265 506 IPR003347 -
Vifa4g00154 553 Pfam JmjC domain, hydroxylase 394 489 IPR003347 -
Vifa4g00154 553 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 4 541 IPR045109 GO:0032454|GO:0033169
Vifa4g00154 553 SMART cupin_9 246 506 IPR003347 -
Vifa4g00154 553 SUPERFAMILY Clavaminate synthase-like 162 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00154 Vifa-Chr4 22883380 22889155 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa4g00154 JmjC 2.1e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00154 K15601 - vvi:100261347 531.176