Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00152 ATGAATTTACTTTCTGCGATTATTCTTGTGCTGCTTATTCCATCTTCACTTGCACAATTATCACAAACTGAAACCAGAACTCTTTTCCAACTTCAGAAGCTTCTAGAATTTCCACAAGTTCTTCAAGGATGGAACAACTGGACAAACTTCTGCTTCCTCCCTCCTTCACCATCACTCAAAATAGTCTGCTCCAACGGCCGCGTAACCGAATTAACCGTCATCGGAAACCGAACTTCTCCATCTTCACACAGCTCTGAACCTTTTCAAGCACTTTCAGGAACTTTCTCAACCGATTCATTTTTCACTGTTTTAACAAAACTTTCAAATTTGAAGATTCTGTCATTAGTTTCATTAGGTTTATGGGGTCCAATACCAGAAAAAATCAACAGGTTTTCATCTCTTGAAATTCTCAACATTAGTTCGAATTTCATTTCCGGTGAAATTCCTGATTCAATCTCTTCCATGAAAAATTTGAAAAGTGTTGTTTTAGCTGATAACCTTTTGAATGGAAATGTTCCAGATCTCAGAAGTTTATCTTCTCTTGAAGAAGTTAATCTTGATGGAAATAAATTCGGTCCGGAATTTCCTTCAATCGGAAACAATATTGTGAAAATCATCTTGAGAAAAAACTTCATAACATCTCAAACTCCTCCTTATCTTTCAAATTTAGAGAAACTTCAAATTTTGGATCTTTCTTCGAATAATTTGATTGGAAGAATTCCCATTTCTATATTCTCTCTACCTTCCCTTCATTACCTGAATTTATCTTCAAACAAGTTTAGCGGAAACCTCTCCACGAATTCACTTTGTACTTCATCTTCGTCGTTGGATTATGTTGATATTTCTCATAATTTTCTAGTAGGAAAATTACCGTCATGCATGGTGAAATCGAAGGCGAAAGTGTTGTATTCGTGGAATTGTTTGTCGAAAAAAAGTTTGAATGATGAACAACATTCATTATCTTATTGTAAAAAAGATGCGGCTTTGGCTGTTAGGCCTCCTGAGAGAAAGGTGGAGAAGGGATCAAAAAGATTGAATCAGAATGTGGATAGATCTGTTGCTCTTAAGTTTTCAGAAAAATCAATAATGAATGCAAGACATGTTCCTCAAACAATGAGGCTAGGCACACATGGACAACCACCATACAATATTTTCACAGAAGAAGAAATTGAAGATGCAACAAACAACTTTGGCGAATCAAATCTAATAGGAGAAGGATCACAAGGACAGATATATAAAGGTTGGTTGAGAAATGGATCAGTGGTCCTAATTAATTGCATAAAGATAAAGCAGAAGGGTTTACCACATAGCATTATGCAGCAATTAGATGTATTGCAAAATTTGAGGCATAGACATATGGTGAGTGTTCTAGGACATTGTATGATTACTCATCAGGACCCTCCTCAAGTAACAAGCACTGTCTTCATTGTACTTGAATATATCTCAAATGTGTCTTTGAGAGATCAACTTACAGATGGAAAAAAGAAGGATATGCTGAAATGGCCACAAAGAATGGCAATAAGCATAGGAGTTGCAAGAGGAGTTCAGTTCTTACATACAGGTGTTGCTCCTGGAGTATTTGGCAACAATTTAAAGATTGAGAATATTTTGTTGGATGATAGTCTCAATGCAAAAGTCAGTGGATACAGAATTCCATTGCCATCCAAGAGTACAGTTAATGAACAAAGTGATGCAGAAAAAGAAGATATTTATCAGCTAGGTGTTATTCTACTTGAAGTCATTACTGGTAGACAAATTGCATCCTCTAGTGAAGTAGAGCAGCTCAAGGATGAGCTTGAAAGAAGTTCATCAGAACCACCATCATCAATACTAAGAAGTACAATTGATCCTTCACTGAGGGGGAGTTATGCCTATGAATCAATGAATACTGCAGTTCAGATTACCATCAATTGTCTCTCTAAGGTTTCTAGTAAGCGTCCTTCAATAGAGGATGTTCTATGGAATTTACAGTATTCAATGCAAGTTCAAGAGTCATGGACTAGCAGTGGGAATCTCAGCACAAAATTTTAA 2031 0.3629 MNLLSAIILVLLIPSSLAQLSQTETRTLFQLQKLLEFPQVLQGWNNWTNFCFLPPSPSLKIVCSNGRVTELTVIGNRTSPSSHSSEPFQALSGTFSTDSFFTVLTKLSNLKILSLVSLGLWGPIPEKINRFSSLEILNISSNFISGEIPDSISSMKNLKSVVLADNLLNGNVPDLRSLSSLEEVNLDGNKFGPEFPSIGNNIVKIILRKNFITSQTPPYLSNLEKLQILDLSSNNLIGRIPISIFSLPSLHYLNLSSNKFSGNLSTNSLCTSSSSLDYVDISHNFLVGKLPSCMVKSKAKVLYSWNCLSKKSLNDEQHSLSYCKKDAALAVRPPERKVEKGSKRLNQNVDRSVALKFSEKSIMNARHVPQTMRLGTHGQPPYNIFTEEEIEDATNNFGESNLIGEGSQGQIYKGWLRNGSVVLINCIKIKQKGLPHSIMQQLDVLQNLRHRHMVSVLGHCMITHQDPPQVTSTVFIVLEYISNVSLRDQLTDGKKKDMLKWPQRMAISIGVARGVQFLHTGVAPGVFGNNLKIENILLDDSLNAKVSGYRIPLPSKSTVNEQSDAEKEDIYQLGVILLEVITGRQIASSSEVEQLKDELERSSSEPPSSILRSTIDPSLRGSYAYESMNTAVQITINCLSKVSSKRPSIEDVLWNLQYSMQVQESWTSSGNLSTKF 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00152 676 Pfam Leucine rich repeat 201 260 IPR001611 GO:0005515
Vifa4g00152 676 Pfam Protein tyrosine and serine/threonine kinase 401 592 IPR001245 GO:0004672|GO:0006468
Vifa4g00152 676 ProSiteProfiles Protein kinase domain profile. 397 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00152 676 Pfam Leucine Rich Repeat 133 154 IPR001611 GO:0005515
Vifa4g00152 676 SUPERFAMILY L domain-like 53 295 - -
Vifa4g00152 676 Gene3D Ribonuclease Inhibitor 201 328 IPR032675 -
Vifa4g00152 676 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 481 672 - -
Vifa4g00152 676 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g02780 21 200 - -
Vifa4g00152 676 SUPERFAMILY Protein kinase-like (PK-like) 377 656 IPR011009 -
Vifa4g00152 676 Gene3D Transferase(Phosphotransferase) domain 1 481 559 - -
Vifa4g00152 676 Gene3D Transferase(Phosphotransferase) domain 1 560 671 - -
Vifa4g00152 676 Gene3D Ribonuclease Inhibitor 21 200 IPR032675 -
Vifa4g00152 676 Gene3D Phosphorylase Kinase; domain 1 358 469 - -
Vifa4g00152 676 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 377 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00152 Vifa-Chr4 21764088 21767782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00152 16 596 Miscellaneous Gene Families AT2G02780 47.779 1.95e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vifa4g00152 PK_Tyr_Ser-Thr 8.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00152 - - cam:101490224 1026.16