Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00150 ATGTCGCATTTGCAGTTACAGCTACACTCACAAGCACCATCACTCTCTTCTTCTTCTTCTTCCACTAGTTCTCGTTTTTCTTTCCTTAAGCTTTTCACAAACAACACTTTCTCTTACTCTCCAACAAACTCTCTTCCTTTCAAACCCTTAACTATCAGATGCCGCCACTCTGACGTCTTTGAAACCACAACCAACCCTTCCTCCACCCCCAACAACCCTTCTGTTGGAGCTTTACCACCTAGGGTTTATGTTGGTCATTCCATTTACAAAGGGAAGGCTGCTCTTACTATCACTCCTAGACCGCCGGAGTTCATGCCTTTGGATTCAGGGGCATATAAGATATCTAGGGATGGTTATGTGCTGCTTCAGTTTGCTCCCTCGGTTGGTCCACGCCAGTATGATTGGAATAGAAAACAGGTTTTCTCGTTATCAGTGGATGAAATGGGAAGTGTGATTAGCCTTGGTGCAAAGGGCTCTTGTGAGTTTTTTCATGATCCTTACATGGGAAAAAGTGACGAAGGCAAAGTCAGGAAGGTTTTGAAAGTCGAGCCTTTTTCGGATGGTTCTGGATTCTTCTTCAATCTCAGTGTTCAAAACAAGCTCGTGAACGTGGAAGAAAGCATCACTCTCCCTGTAACAAAAGCCGAGTTATCAGTTTTGAGCGCAATTTTCAAGTACATCATGCCGTACCTTCTTGGTTGGCATACCTTTGCAGACTCGATAAATCCGGAATATTCTGTGGCGGCGGCGAGTGTGGCAAGCAATGCCAACCCAAAATATGGAGGAGACTATGAATGGAACAGATAG 807 0.4461 MSHLQLQLHSQAPSLSSSSSSTSSRFSFLKLFTNNTFSYSPTNSLPFKPLTIRCRHSDVFETTTNPSSTPNNPSVGALPPRVYVGHSIYKGKAALTITPRPPEFMPLDSGAYKISRDGYVLLQFAPSVGPRQYDWNRKQVFSLSVDEMGSVISLGAKGSCEFFHDPYMGKSDEGKVRKVLKVEPFSDGSGFFFNLSVQNKLVNVEESITLPVTKAELSVLSAIFKYIMPYLLGWHTFADSINPEYSVAAASVASNANPKYGGDYEWNR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00150 268 MobiDBLite consensus disorder prediction 1 21 - -
Vifa4g00150 268 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vifa4g00150 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 268 IPR009044 GO:0003677|GO:0006355
Vifa4g00150 268 Gene3D Transcriptional Coactivator Pc4; Chain A 75 250 IPR009044 GO:0003677|GO:0006355
Vifa4g00150 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 26 268 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00150 Vifa-Chr4 21056477 21058757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00150 15 268 Whirly Transcription Factor Family AT1G14410 59.216 4.72e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vifa4g00150 Whirly 6.5e-59 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00150 K26559 - gmx:100789252 343.584