Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00149 ATGTTCCACCCTCCCTTTCGCTTTCTCACATTCCCATGCACAAAACCACCTCAACTAAACATTCACCTCTTCCTTTCCCTTCCCGCACCATCCTTACTCTGCTCATCACTCAACGATGCTTCCTTTTCCATCCCTAAATCAACCCAGTTTGGTTATACTCCTCCAGAGGATCTCTTTGGACTTGAGGTGGAATTCAAGCCAAGGAAAGCGAACTCGCATATAAGAGAACCAAGGTCATGGTTTGGACCAAATGGACAATATATCAGAGAGCTACCTTGTCCAAGTTGTCGAGGAAGGGGTTATACTCCTTGTACAGAATGTGGAATTGAGAGATCTAGATCAGACTGTCCAAAGTGTAATGGAAAGGGTTTACTGACTTGCCACCAGTGCTCTGGAGATTGTGTTATATGGGAAGAATCAATCGATGAACGGCCATGGGAGAGAGCTCAATCAATATCGCCACTCAAAGTGAAGGAAGACGATGAAGTTGACAAATTGGACATAAAGCTAGATGCAAAGAAAAAATCTAAACGTGTTTACCAGTCACCATCTCCTGAAGTTGGATTGAAGATTAGTCTTTCTTTAAAAAGTCTCAATGCCAAAACCGGTCTATTTAGCAAACGGATGAAGATCATTCACCAGGATCCAATTCTTCAGGCTCAGAGAGTGGTTGCTATTAAGAAAGCCAAGAGAACCGTTTCAGCTAGAAAGCATGCTTCCAAAACTATGAATGCATTCTTCAGCGATCCAATAAATCGTCAGAAAAGGAGCATCGCCATGAAAGGAGTGAAATTCTACTGTCAAAACTGTGGACGTGAAGGACATAGGAGACACTACTGTCCGGAACTCAAGGACGGTTTAACTGATCGGCGGTTCACTTGCAGGCTATGCGGCGAGAAAGGCCACAACAAAAGAACGTGCGGTAAGTTAAGGATAAGCCATAGTGATGGGAGAGTTATAAAACATCATCGATGTAAAATATGTCAACAATATGGCCATAACAGAAGGACATGTCCACAAGTTGTTTCGAATAAAAGATTAGACACGGCTTCTCGACGAGTATATATCTGTCGATTGTGCCAGAAAGAAGGACACAATGTTAGGACATGTCCTAGAAGAATAGTTGATACTGAAGATTCTCAAGAGTAA 1149 0.4256 MFHPPFRFLTFPCTKPPQLNIHLFLSLPAPSLLCSSLNDASFSIPKSTQFGYTPPEDLFGLEVEFKPRKANSHIREPRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRSDCPKCNGKGLLTCHQCSGDCVIWEESIDERPWERAQSISPLKVKEDDEVDKLDIKLDAKKKSKRVYQSPSPEVGLKISLSLKSLNAKTGLFSKRMKIIHQDPILQAQRVVAIKKAKRTVSARKHASKTMNAFFSDPINRQKRSIAMKGVKFYCQNCGREGHRRHYCPELKDGLTDRRFTCRLCGEKGHNKRTCGKLRISHSDGRVIKHHRCKICQQYGHNRRTCPQVVSNKRLDTASRRVYICRLCQKEGHNVRTCPRRIVDTEDSQE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00149 382 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 53 308 - -
Vifa4g00149 382 Pfam Zinc knuckle 355 371 IPR025829 -
Vifa4g00149 382 SUPERFAMILY Retrovirus zinc finger-like domains 319 373 IPR036875 GO:0003676|GO:0008270
Vifa4g00149 382 Gene3D - 263 310 - -
Vifa4g00149 382 ProSiteProfiles Zinc finger CCHC-type profile. 267 282 IPR001878 GO:0003676|GO:0008270
Vifa4g00149 382 Gene3D - 318 382 - -
Vifa4g00149 382 SMART c2hcfinal6 356 372 IPR001878 GO:0003676|GO:0008270
Vifa4g00149 382 SMART c2hcfinal6 324 340 IPR001878 GO:0003676|GO:0008270
Vifa4g00149 382 SMART c2hcfinal6 266 282 IPR001878 GO:0003676|GO:0008270
Vifa4g00149 382 SMART c2hcfinal6 293 309 IPR001878 GO:0003676|GO:0008270
Vifa4g00149 382 SUPERFAMILY Retrovirus zinc finger-like domains 264 310 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00149 38 380 C2H2 Transcription Factor Family AT5G20220 63.456 1.73e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00149 - - cam:101493936 595.504