Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00148 ATGGAGCTTACCACTGTGAAATCTGAACTGAGTCCAAGAAGTCATAGAATTCTCATGCTGGATAATGATTCTATTCCAAGTACTAAATGTGTAAAAAGGCGAAGAAGAGATACGTCGGTGTTAGGAGGGAATGAACAACGAAGTGATGTATCAGAAATACAGCAGCCATTGAGTGGTCAATCCACTGCAACAACTGTGAAGAGAAGCTCAAAGTTTAGGGGTGTTAGTAGACATAGATGGACCGGAAGGTATGAAGCTCATTTATGGGATAAAGGGACATGGAATCCTACTCAAAAGAAAAAAGGAAAGCAAGGTGCTTATAATGATGAAGAAGCTGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGAACATCGACTTTTACAAATTTTCCTGTACCGGACTACGAGAAAGAAATTGAGGTAATGATAACTATGAGCAAAGAAGAGTATCTTGCTTCTTTGAGAAGGAGGAGCAGTGGTTTTTCCAGAGGTGTATCAAAATATAGAGGAGTAGCAAGACACCATCACAATGGAAGATGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAGTATCTCTACCTTGGGACTTATGGTACACAAGAAGAGGCGGCTCGCGCGTATGATATTGCGGCCATTGAGTATCGAGGCATAAATGCAGTGACAAACTTTGACTTAAGCACTTACATCAGATGGTTACGACCAGGACCACAAGAACAAAAGCCAAGCACAGAACCTCAAGTACCATTTGCAGTCTCTAACTCAATCCAAATAAGTGGAAACATCGATGCGTCCAACTCAATCGTCAATCCAAAAAATCTTTTGCAAGTTGAAATTACAAAGAAGCAAAAGTTTTCGAACTCTATGATCCCTTTAAGTCCTTGCAATAAGCCATCTTCACCAACAGCATTAGGACTTCTCCTAAAATCTTCCATGTTTAAAGATAGATTACCAAACTTGGTGTCATCAGAAGAGAGGTCATTGCCAATGTATCATGGAACTAAGCAATCGTTATGGAGTAGTGCTTCCAACATTTCTAACTGA 1053 0.4036 MELTTVKSELSPRSHRILMLDNDSIPSTKCVKRRRRDTSVLGGNEQRSDVSEIQQPLSGQSTATTVKRSSKFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYNDEEAAARAYDLAALKYWGTSTFTNFPVPDYEKEIEVMITMSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGPQEQKPSTEPQVPFAVSNSIQISGNIDASNSIVNPKNLLQVEITKKQKFSNSMIPLSPCNKPSSPTALGLLLKSSMFKDRLPNLVSSEERSLPMYHGTKQSLWSSASNISN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00148 350 SUPERFAMILY DNA-binding domain 70 135 IPR016177 GO:0003677
Vifa4g00148 350 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 48 247 - -
Vifa4g00148 350 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677
Vifa4g00148 350 SMART rav1_2 71 140 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 SMART rav1_2 170 234 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 MobiDBLite consensus disorder prediction 32 70 - -
Vifa4g00148 350 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 CDD AP2 169 230 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 ProSiteProfiles AP2/ERF domain profile. 71 134 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 MobiDBLite consensus disorder prediction 43 70 - -
Vifa4g00148 350 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700|GO:0006355
Vifa4g00148 350 Gene3D AP2/ERF domain 70 135 IPR036955 GO:0003700|GO:0006355
Vifa4g00148 350 Pfam AP2 domain 70 126 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 Pfam AP2 domain 169 220 IPR001471 GO:0003700|GO:0006355
Vifa4g00148 350 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00148 Vifa-Chr4 20833483 20835470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00148 67 232 AP2-EREBP Transcription Factor Family AT5G17430 68.639 3.68e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa4g00148 AP2 3.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00148 - - gmx:100799621 506.908