Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00146 ATGGGGAGATCATTATACATTTTTCTTTTTATGCTTTGTTTGGCAATTATTATTCCTACATTGAATGCCAATGTATTAGAGAGCAATGAGTATTGGAAAGAACAACGGCCTGAGTTTGATTCATATTGGCAGGAAAGGGCTAAAGTTGCAAAACAAGATAATCATGCAGCTTATTTTCCTGATCCTTTTGCAGTCTCCGGCAATTTTACCGCTTCTATTTCCGAAATCATAGGTGGAAAGAGCACAAGAAGGAACTTGAAGGGACAAAAAGGAGGCCAATGTTTAGCCACAAACCCAATTGACAGATGCTGGAGGTGTGACCCAAATTGGGCTAACAACCGCCAGAAGCTAGCAGACTGTGTCCAAGGATTCGGCAGAAACACCCGCGGAGGTAAAGGCGGTCCAATCTACGTCGTCACTGATCCTTCTGACAACGAATTGTTGGACCCAAAACCTGGAACTCTCCGTCATGCAGTCACCCGTAACGGTTCCCTTTGGATCACATTCGCACGCAACATGATGATCACACTCCAACAAGAGCTTATAATGACAAGTGACAAGACCATTGATGGTAGAGGAGTTGATGTTTACATCGCGAACGGAGCCGGAATTACCATACAATTTATTAAGAATATAATCATCCATGAAGTGAAGATTTATAACATTCAAGTCCGTGAAGGTGGCATGATTATAGATTCTGAGAGCCATTATGGTATAAGAACTAGAAGTGATGGTGACGGTATTTCCATCTTTGGTTCAAGTAATATTTGGATTGATCATGTTTCAATGAGAAATTGTAGTGATGGGTTGATCGACGCGATCATGGGTTCGACTGCTATTACAATCTCGAACAGCCATTTCACCGACCACAATGAGGTGATGCTTTTCGGGGCTAGTGACTCGTATACTGATGACAAAATCATGCAAATTACATTAGCATTCAATCACTTTGGAAAGAGATTAGTCCAAAGGATGCCAAGAGCAAGATTTGGTTTTATCCATTGTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGTAACCCTACCCTTATCAGTGAAGGTAACAGATTCATTGGCCCCGAAAACAAATTCGTAGGCAAGGACCAAATCAATGCTAAAGAGGTAACAAAGAGAGAATACACGGAAGAGAAAATATGGACAAGTTGGCAATGGAGATCGATCAACGACGAGTTTCTGAATGGAGCATACTTTGTAAACTCGGGACCGGACCTAAAGAACAGACCATTTTCAAGAAAAGACATGATCACAGCTAAACCAGGAAGTTATGTAGGAAGGCTTACAAGGTATTCTGGAATCCTAGGATGCATTGTTGGTAAACCTTGTTAG 1365 0.4147 MGRSLYIFLFMLCLAIIIPTLNANVLESNEYWKEQRPEFDSYWQERAKVAKQDNHAAYFPDPFAVSGNFTASISEIIGGKSTRRNLKGQKGGQCLATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTRGGKGGPIYVVTDPSDNELLDPKPGTLRHAVTRNGSLWITFARNMMITLQQELIMTSDKTIDGRGVDVYIANGAGITIQFIKNIIIHEVKIYNIQVREGGMIIDSESHYGIRTRSDGDGISIFGSSNIWIDHVSMRNCSDGLIDAIMGSTAITISNSHFTDHNEVMLFGASDSYTDDKIMQITLAFNHFGKRLVQRMPRARFGFIHCVNNDYTHWEMYAIGGSSNPTLISEGNRFIGPENKFVGKDQINAKEVTKREYTEEKIWTSWQWRSINDEFLNGAYFVNSGPDLKNRPFSRKDMITAKPGSYVGRLTRYSGILGCIVGKPC 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00146 454 SUPERFAMILY Pectin lyase-like 98 445 IPR011050 -
Vifa4g00146 454 Gene3D - 97 447 IPR012334 -
Vifa4g00146 454 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 425 448 IPR018082 -
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Vifa4g00146 454 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Vifa4g00146 454 Pfam Pectate lyase 181 363 IPR002022 -
Vifa4g00146 454 PANTHER PECTATE LYASE 18-RELATED 50 452 IPR045032 GO:0030570
Vifa4g00146 454 SMART amb_all 172 369 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00146 Vifa-Chr4 19872292 19873763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00146 6 454 Polysaccharide Lyase AT1G14420 57.388 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00146 K01728 - gmx:100798579 712.605