Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00140 ATGGCTGGTGTTTCGAGTCGAACTCGAAGTAAGAAGATCTCAATGGCGGGTGTTTCGAGTCGAACTCGAAGTAAGAATGTTCCGCTGTTGGCTTGTCTTTCATTTCATGGCTCGTTGAAATCTAAGCGTACAAAATGTGATATGGGTTTCGCCTCTAAAAAAAGGAAGCCGAATCAAGACTCTCTTCTGTTGCATGAACAAGTTAATGTCATTTGCTTTGACACTGACAAAGGAGAGTTGGAAGGTTGCGAAAATAACAGTTTTGAGGGTTTTGTTGGTGCTGAAAATGGAGGGATTGGTGACTTAGCTGAAAAAGATGAAATCTTTGATGATGATAAGTGTGGTGATGAATCTGAATCCGAATCTGATGATGATGAGTGTGATGATGAATGTGATGATGAATGTGATGATGGCGATGATGATGAAAGTGAGGAAATTGAGACAAGTGATGAAGAATATCAAGTTGATGAGGTGAATGAAGTTTCTGACAGTGATGATAGCAGTTCTTCTTATGCTGATGATGATGATAATGGTGAGGAGAAAGAAGAGAAGACAAAGGGTTGTAAGAAGAAGGAGGAGAAGAAAATGGGTTGGAAGAAGGATGAACAGAAGAACATGGGTTGGGAGGAGGAGAAGAGAATGAGTTGGGAGGAGGAGAAAATGAGTTGGGTGGAGACGGATGAAGAGGTGGTGTTGGAGGAGAAAATGGGTTGGGAGGAAAAGGAGGAGGTTGTGGTGGAGGAGGAGGTTGTAGTGGAGGTGGAGGAGACGGTGGAGGAGACGAAAATGGGTTGGAAGAAGAATGAGGAGGAGACGAAAATGGATTGGAAGAAGAATGAGGAGGAGAAAAACATGTGTTGGGAGGAAGAGAAGGAGGAGGAGGAGGAGGTGGTGGAGGTGGAGGAGGAGGAGACCGAGGAGGGGGTGGTGGCGGAGGAGAAAGAGGATTTGGAAATGGTTTGGCAAGAATGTGCCAATGGGCTGGCAGAGATGGTGAGAGAGGCCAACGGTCAAAATAGTAAGAATGATAATTGTTCATGTTCTGTAAACAATGATGAATTGGAGCATGCATATGAAGGTAATGTAAGATCCTCAAATGCCTTTAAGAAAAAGTGTTCTTTTGTTCCAATGGAGGCTCCTTCTTCAAAAGATGTGCAAATGAAAGTGAGAAATGTCTCTAATGATGATGATAATGTTTATGTTGGCAAAACCAAATCCAAAGCCAAACACAGTGTGGTTATAGGTGATTTTGTTGAAGAAAAAATGCAATCTTTTCGAGGTTTAGGTGTTGGGAACCAAACTGATTCTTCTATTCAAACACAAGATAAACAGCAAATGATGGAGATGAAGGGAAGGGATTATAAAGGTAGAGCTAACACCGGTACTGGCGAGAAGAAGGAATCCATGGATAAAAACAGTTTGAATCAAAGGGGAAAAGGCAGAGTTTTTAAGCCAAAGGAGTTGCGTTTAGTCGAACTCCTTGCTGAATACTATTGGGGAAACAAGAATAATAAAATTCAGAATCATTCACCTGTGTTGGAGATAAAAGATGTTATTCGTCATGATACACGCCCACCACCTGTTTGTAACGAGACAGCTCCATTGATATGGAGCCTTAAAAAGGTGGAGAAAGTGCAAAAGACCAAGAACGAGGAGGAGGAGGAAGTACTGTGGGATCAAATGGATACAAGCCTCAGAGAACTTGAAGCTGAATCCATGATCGGAAATTTGGGGACCAATGAAGCTACTCAGGATAAAATCGGAAGTCCATTCTCTGACTGTGAACATGACATCTATCTTGACGAAGAGATTGGTGTATATTGCAGGCGGTGTGGTTGGGTTGTCACTGACATTAAAGATGTCTCACCACAAGTGGTTGATAAATTTCCCTATGAAGGTTCGGGACAAAGGGCTTCGTTTGGTGATGCAAATGTCTCACACTTTCATGACTCCCACTTCAATGTTTCTGATCGTAACTCCGAGACTAATTTCTCTTGTGATGAAAGAACAGTTTGGGACCTAATTCCTGATGTAAAACAGACCTTATATTCTCACCAACAAGAAGGTTTTGAGTTCATTTGGAATAAGTTAGTAGGAAACATCGAGCTTCAAGGGTTATTAAAGAACATCAATCTTCAAAGGGAGGGTGGTTGCATTATTTCGCACGCTCCTGGTACTGGAAAGACAAAGCTAACAATAATGTTTCTCAAGGCTTATTTAAAAGTTTTTCCGAAATGCTTGCCGGTCGTTGTTGCTCCAGCGGGTTTGTTGCTTACTTGGGAAGACGAATTCAAAAAATGGGACATAGGTGTTCCATTTCACAATTTGAACAATCCTGAGTTATCTGTTAAAGAGCATGATAATGTTGTTAATGCAACTAATTGGTCTGATACACGGCGGCATAGTTTGGACGAGACGCGAATGGCTAAACTGATTTCGTGGTTCAAAGAAACGAGCATTCTGGGAATCAGTTACACTTTGTTCAAGGATCTAGCCCACAGAGAAGGGGAATGCAAAGATAAGAAAAAGAATAAGCATGTGACAGGATGGGACTGGGAGTCCGAAGATAAGAAAAAGAATAAACAGAAGAGAAAAGAAAACAGTTATATGAGAAAGGCTTTGCTTGAAGCTCCTGGTTTGTTGGTTCTAGATGAAGGACATACGCCAAGAAATGCAAGAAGTCGTGTTTGGAAGGTGTTGTCAAAAATTCAAACAAAGAAGCGAATTATGCTTTCTGGAACTCCTTTCCAGAATAATTTCTTGGAACTGTACAACACTTTCAGCATAGTGAAGCCTTCTTTTCCTAACACGATACCGCCCAAGCTGAAAAAGTTTTGCCAGAAACCTAAGAAAGCAGCAAAAGCAGAATGGAGTTGGGAACCGGTTACTGGAAACAGTACAACAGGAAATCCTTCTGATGATAAGATCAGGCATTTGAAGTTGCTAATGGATCCCTTTGTTCATGTTTACAAAGGCGCGATTCTTCAGCAAAAGCTTTTCGGGTTAAGAGATTGTGTGCTTCGTTTGAAGCCGGCCAGTCTTCAGAAACAAATTCTTGAGAGCATTAAAAGTTCTCAGAACATATTGAACTTTGAGCATAAGCTGATACTGGCATCAGTCCATCCGTCTCTATTCCTCGAATGCAAACTTTTAGAAGAAGAAGAATCTGTTGTCGACAAGGAACAGCTTGAAAAACTTAGATTGAATCCAAATATCGGTGTCAAAACAAAATTTTTGGTGGAGTTTGTTAATCTTTGTGTTGCTGTTAATGAAAAAGTTCTTGTGTTCAGCCAATTCATCCCCCCTTTACGCTTAATAGTTGAGCAATTAAACTCGATCTTCAATTGGGCCGAGGGGAAGGAAATACTCTACATGGATGGCAATATTGATCTGAAGGAAAAGCAGTCTTTAATCCACAACTTCAACGATGCAAACAGCGAAGCTAAGATTCTACTTGCATGTACGAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCGTCAAGGGTTGTGCTACTTGATGTTGTATGGAATCCTTCTGTCGAGCGACAGGCTATCAGTAGAGCATATAGGATTGGACAAAAGAGAGTTGTGTACACGTACCATCTGCTCACGCACGAGACTACCGAGTGCGTCAAATATTTCAAACAGGCCGAAAAGGACCGGTTGTCTGAACTAGTATTTTCGGATAATGTCAAGGGCAAAAACCGTGCTGTGAACTTTGAAGATGGTATTCTTGATCTAATGCTTCAGCACGAAAAACTGAAAGACATGTTTGTCGAGTGTGTGGTACAACCAAAGGAAAAAGATTTGGTGGAGAGTTATTATTATTGA 3834 0.4131 MAGVSSRTRSKKISMAGVSSRTRSKNVPLLACLSFHGSLKSKRTKCDMGFASKKRKPNQDSLLLHEQVNVICFDTDKGELEGCENNSFEGFVGAENGGIGDLAEKDEIFDDDKCGDESESESDDDECDDECDDECDDGDDDESEEIETSDEEYQVDEVNEVSDSDDSSSSYADDDDNGEEKEEKTKGCKKKEEKKMGWKKDEQKNMGWEEEKRMSWEEEKMSWVETDEEVVLEEKMGWEEKEEVVVEEEVVVEVEETVEETKMGWKKNEEETKMDWKKNEEEKNMCWEEEKEEEEEVVEVEEEETEEGVVAEEKEDLEMVWQECANGLAEMVREANGQNSKNDNCSCSVNNDELEHAYEGNVRSSNAFKKKCSFVPMEAPSSKDVQMKVRNVSNDDDNVYVGKTKSKAKHSVVIGDFVEEKMQSFRGLGVGNQTDSSIQTQDKQQMMEMKGRDYKGRANTGTGEKKESMDKNSLNQRGKGRVFKPKELRLVELLAEYYWGNKNNKIQNHSPVLEIKDVIRHDTRPPPVCNETAPLIWSLKKVEKVQKTKNEEEEEVLWDQMDTSLRELEAESMIGNLGTNEATQDKIGSPFSDCEHDIYLDEEIGVYCRRCGWVVTDIKDVSPQVVDKFPYEGSGQRASFGDANVSHFHDSHFNVSDRNSETNFSCDERTVWDLIPDVKQTLYSHQQEGFEFIWNKLVGNIELQGLLKNINLQREGGCIISHAPGTGKTKLTIMFLKAYLKVFPKCLPVVVAPAGLLLTWEDEFKKWDIGVPFHNLNNPELSVKEHDNVVNATNWSDTRRHSLDETRMAKLISWFKETSILGISYTLFKDLAHREGECKDKKKNKHVTGWDWESEDKKKNKQKRKENSYMRKALLEAPGLLVLDEGHTPRNARSRVWKVLSKIQTKKRIMLSGTPFQNNFLELYNTFSIVKPSFPNTIPPKLKKFCQKPKKAAKAEWSWEPVTGNSTTGNPSDDKIRHLKLLMDPFVHVYKGAILQQKLFGLRDCVLRLKPASLQKQILESIKSSQNILNFEHKLILASVHPSLFLECKLLEEEESVVDKEQLEKLRLNPNIGVKTKFLVEFVNLCVAVNEKVLVFSQFIPPLRLIVEQLNSIFNWAEGKEILYMDGNIDLKEKQSLIHNFNDANSEAKILLACTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRIGQKRVVYTYHLLTHETTECVKYFKQAEKDRLSELVFSDNVKGKNRAVNFEDGILDLMLQHEKLKDMFVECVVQPKEKDLVESYYY 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00140 1277 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 345 1270 IPR044567 GO:0080188
Vifa4g00140 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 664 948 IPR027417 -
Vifa4g00140 1277 Coils Coil 277 304 - -
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 1 22 - -
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 280 310 - -
Vifa4g00140 1277 Pfam SNF2-related domain 713 1018 IPR000330 GO:0005524|GO:0140658
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 286 310 - -
Vifa4g00140 1277 Gene3D - 654 963 IPR038718 -
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 110 178 - -
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 454 474 - -
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 110 220 - -
Vifa4g00140 1277 SMART ultradead3 678 945 IPR014001 -
Vifa4g00140 1277 Pfam Helicase conserved C-terminal domain 1086 1193 IPR001650 -
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 454 478 - -
Vifa4g00140 1277 SMART helicmild6 1104 1193 IPR001650 -
Vifa4g00140 1277 Gene3D - 1003 1270 IPR027417 -
Vifa4g00140 1277 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 709 933 IPR014001 -
Vifa4g00140 1277 CDD SF2_C_SNF 1072 1204 - -
Vifa4g00140 1277 MobiDBLite consensus disorder prediction 179 220 - -
Vifa4g00140 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 878 1231 IPR027417 -
Vifa4g00140 1277 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1081 1240 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00140 Vifa-Chr4 19690261 19694535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00140 1090 1249 RAD5 or RAD16-like Gene Family AT5G05130 37.888 5.78e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa4g00140 SNF2_N 1.9e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00140 K10875 - gmx:100812737 818.15