Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00132 ATGAACCCTGAAGCAATTACAGTTGTGATTTTTAGGTTTTATTTGGGAATTGGTTATCTGGGTATGTGTTGGAGGTGGAGGGTGTTTAAGGGAGGAAAGAAGAAGAAGAAGCAAGATGGGGTGGTGGAAGATGAGGAGATTGAAACTGGGTGCTGGTTTAGCTTTAGGTTCATTGGGAGTTGCATTTCGGCAAGATCCAAAGTTGATAGCTCTGTTAGTGGCGCAAGTACTAATTATGCTGAAAGCAAATCAACTATTGATACAAGTAGAGACCAACCATCGGTTCCGGTAGTCTCTTCGACAACCACTACTACTAGTAATGCCGAAAGCAATTCATCTACTTCGAAACTTGAAGAGGAGATTAAAGTTGCGTCCAGGCTGCGAAAATTCTCTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGGCCCGAGAGTCTTCTCGGCGAAGGTGGGTTTGGTTGTGTGTTCAAAGGATGGATTGAAGAAAATGGAACTGCTGCAGTGAAACCTGGCACAGGACTTACCGTTGCTGTCAAAACCCTTAACCACGATGGTCTCCAAGGTCATAAAGAATGGCTGGCTGAAGTAAATTATCTTGGTGATTTAGTTCATCAAAACCTTGTCAAACTTATAGGCTACTGTATCGAGGATGATCAACGGTTGCTAGTATACGAGTTTATGCCTCGTGGAAGCCTGGAAAACCACTTGTTTAGAAGAGCCTTGCCTCTTCCGTGGTCCATTAGGATGAAAATTGCACTCGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCTGTGATATATAGGGATTTCAAAACCTCCAATATACTATTGGATGCAGAGTACAATGCCAAGCTTTCCGACTTTGGACTAGCAAAAGATGGTCCGGAGGGTGATAAAACCCATGTGTCTACTCGAGTTATGGGAACTTATGGTTATGCCGCACCAGAATATGTCATGACAGGGCATCTTACATCAAGAAGTGATGTGTATAGTTTTGGAGTTGTACTACTTGAGATGATAACCGGGCGAAGATCCATGGACAAAAACCGACCCGAATGCCGAGATCCAAAAGCAAGACCACTAATGAGTGAAGTTGTAGAAGCATTGAAGCCTCTCCCAAACCTAAAGGACATGGCTAGTTCATCATACTATTTCCAGACAATGCAAGCCGACCGTTTTAGCGCGAGTCCGAATACTCGTAACGGTAGACAAGGAGCGTTCACGCGGAACGGACAACAACAAAGGAGCCTTTCCATATCACATGGTACTCATGCCTCTCCATTTCACCATCAGTATCCTCAACATTCACCAAAACCAACCGGAAAAGCGCAAAGTTGA 1356 0.4395 MNPEAITVVIFRFYLGIGYLGMCWRWRVFKGGKKKKKQDGVVEDEEIETGCWFSFRFIGSCISARSKVDSSVSGASTNYAESKSTIDTSRDQPSVPVVSSTTTTTSNAESNSSTSKLEEEIKVASRLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWIEENGTAAVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNYLGDLVHQNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRALPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMITGRRSMDKNRPECRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFSASPNTRNGRQGAFTRNGQQQRSLSISHGTHASPFHHQYPQHSPKPTGKAQS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00132 451 Pfam Protein tyrosine and serine/threonine kinase 146 352 IPR001245 GO:0004672|GO:0006468
Vifa4g00132 451 ProSiteProfiles Protein kinase domain profile. 142 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00132 451 ProSitePatterns Protein kinases ATP-binding region signature. 148 180 IPR017441 GO:0005524
Vifa4g00132 451 Gene3D Phosphorylase Kinase; domain 1 115 227 - -
Vifa4g00132 451 Gene3D Transferase(Phosphotransferase) domain 1 228 397 - -
Vifa4g00132 451 MobiDBLite consensus disorder prediction 400 451 - -
Vifa4g00132 451 MobiDBLite consensus disorder prediction 400 436 - -
Vifa4g00132 451 MobiDBLite consensus disorder prediction 82 114 - -
Vifa4g00132 451 PANTHER OS01G0588500 PROTEIN-RELATED 107 358 - -
Vifa4g00132 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Vifa4g00132 451 FunFam Serine/threonine-protein kinase BIK1 109 227 - -
Vifa4g00132 451 SUPERFAMILY Protein kinase-like (PK-like) 128 398 IPR011009 -
Vifa4g00132 451 FunFam Lectin-domain containing receptor kinase A4.3 228 376 - -
Vifa4g00132 451 MobiDBLite consensus disorder prediction 82 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00132 Vifa-Chr4 17608999 17616449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00132 111 358 Glycoside Hydrolase AT3G07070 58.498 5.13e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g00132 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00132 - - gmx:100787127 721.85