Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00124 ATGGAAGATGCATGGGAAACGTGGATATCTTCTATGGAAACGGATGGTCACTCATTGGATGAAGACATGTTTGATATAGAGAATGTGCAACAACCGAGTTTCTCTTTTGAGGGCTTTAATAATGCCAACCCTTCAATTCATGAAAACTTGATCAATAAGAGTAAGAACTCAAATTGTCTCATTTCTTCACAACAAACACCATCTCAATACCTTCTGTCTTTTGAAAACTCGTCTGTGGAACCTTCTCCTAATAATAGTGCCATTGCTACATCTTCTTCTATCATGAACCCAAAAACAACAACACTAAATCAAAATGAGAGTAGTGAGTTACCAAAATTAGTTAATAAAACCACCAAGAAGCGTAGAAGTGCATCTGAGATACAGGATCATATCATAGCTGAGAGAAAAAGGAGACAAGTTATTGCTGAGAGGTTCATAGCACTTTCTGCCACCATTCCGGGATTGAAGAAGACAGATAAACTCTACATACTTGAAGAAGCTATCAATTATGTGAAACAACTTAAAGAGAAAATAAAAGAGCTGGACAATCAAAACAAAATGAAAAATAAGGATTCAGAAATGCTCATCAAGAAATCTCAAGCTTGCACAAAAGAAGATGATATTGATTATTCTAAGAAAAAACTACCTAATGTTAAAGCAAGAGTGATAGATAAGGAAATTATGATTGGAATCCATTGTGAGAAACAAGAGAATATTGTGGTTAAAATAATGGGGTTGCTTCAAAATCTTCACCTATCACTTGCTAGTAGTAGCGTATTACCATTTGGAAATTCCACTCTTAAAGTCACAATCATTGCTCAGATGAATGATAAATACTGCATGAACGTGACCGATCTTGTTAAAAACTTGAGGCATGATCTCTTGGATTCACGTGACAATCAGAATAATATTTCTGAGAAGACTACATAG 930 0.3505 MEDAWETWISSMETDGHSLDEDMFDIENVQQPSFSFEGFNNANPSIHENLINKSKNSNCLISSQQTPSQYLLSFENSSVEPSPNNSAIATSSSIMNPKTTTLNQNESSELPKLVNKTTKKRRSASEIQDHIIAERKRRQVIAERFIALSATIPGLKKTDKLYILEEAINYVKQLKEKIKELDNQNKMKNKDSEMLIKKSQACTKEDDIDYSKKKLPNVKARVIDKEIMIGIHCEKQENIVVKIMGLLQNLHLSLASSSVLPFGNSTLKVTIIAQMNDKYCMNVTDLVKNLRHDLLDSRDNQNNISEKTT 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00124 309 Gene3D - 124 206 IPR036638 GO:0046983
Vifa4g00124 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Vifa4g00124 309 PANTHER BHLH TRANSCRIPTION FACTOR 8 296 - -
Vifa4g00124 309 Coils Coil 164 191 - -
Vifa4g00124 309 SMART finulus 131 180 IPR011598 GO:0046983
Vifa4g00124 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 192 IPR036638 GO:0046983
Vifa4g00124 309 Pfam Helix-loop-helix DNA-binding domain 129 175 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00124 Vifa-Chr4 15241406 15246613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00124 96 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 36.771 1.55e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g00124 HLH 2.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00124 - - psat:127076671 439.499