Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00116 ATGAAGTGCTTTTACTTCAAGTTTACACTCAAGGGTAGGGGTCAGAGATCAGCACCTGAGCTAAAAGAGCAAGAGAAAAGCCAGTTTTCAGGATCTGAAAGAGTTACAAAGTCTTCTTGTTCATCTACCTCTTCACCTAGAGGTATACCAAAACTTTATGAAGAGAAGGGTCACAATTTGAGGGTGTTTTCGTTCTCGGAGCTTAAACGTGCAACAAGTGATTTCAATAGGCTTCTTAAGATAGGTGAAGGTGGATTTGGAAGTGTTTTTAAAGGTTCAATTAAGCCTGTTGGTGGAAATGGTGAGAATGTCTTGGTTGCCATCAAAAGACTTAACAAAGATGCATTGCAGGGTCATAAGCAATGGTTGACAGAAGTTCAGTTTCTCGGTGTTGTGGAGCATCCAAATCTTGTGAAGCTTATTGGATATTGTGCTTTGGATGGTGAGAGAGGGATCCAAAGATTACTCGTGTACGAATACATGCCGAATAGAAGCTTAGAAGCTCATCTTTTCAATAAAGCTTATGATCCTGTGCCTTGGAAAACAAGACTTGAAATTGCACTTGGAGCAGCTCAAGGCTTATCTTATCTCCATGAAGAATTAGAAGTCCAGGTGATATATCGTGATTTTAAATGCTCAAACGTGCTACTGGATGAAAATTTTAAACCAAAACTTTCTGATTTCGGACTCGCTAGGGAGGGACCGGTAGCGGGTGATACTCATGTTTCAACTGCTGTAATGGGAACACATGGTTATGCTGCTCCGGATTACATTGAAACAGGCCATCTCACTTCCAAGAGTGACGTGTGGAGTTTCGGTGTCGTGCTATACGAAATACTCACCGGTAGGCGTTCGTTGGCAAGAAACCGGCCAAAAACCGAACAAAAACTATTGGAATGGGTGAAGAACTATCCATCTGATAGCAAAAATTTCGACACGATAATGGATCCAAGACTTGAAAGACAGTATTCAATCAACGCAGCGAGAAAAATCGCAAAGCTCGCTGATCATTGTCTGCGTAAGAGCGCGAAAGATAGGCCTGCAATGAGTCAGGTGGTAGAGAGATTGAAGCAAATAATACAAGAATCTGACGAAGAACAAGAACAAGAACAAGAAAAAGAACAAGATGAACACGACTCCAATGAGACGAACATTGTTGAGGTAGTTGAAAATGAATCGGTTGAGGCGCCTCTAGAAGAGACGAAATCGTCGGGCTCGACTGAGTTATGGAGAAAGAGAATGGAACATCTTGCAAAACTTGGTGAGCATGTGGAGGGTGCTAGTAGAAAAAGGTTCATGATCCAACAGAGAGCTAATGTTTCTTCTTAG 1329 0.4184 MKCFYFKFTLKGRGQRSAPELKEQEKSQFSGSERVTKSSCSSTSSPRGIPKLYEEKGHNLRVFSFSELKRATSDFNRLLKIGEGGFGSVFKGSIKPVGGNGENVLVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDGERGIQRLLVYEYMPNRSLEAHLFNKAYDPVPWKTRLEIALGAAQGLSYLHEELEVQVIYRDFKCSNVLLDENFKPKLSDFGLAREGPVAGDTHVSTAVMGTHGYAAPDYIETGHLTSKSDVWSFGVVLYEILTGRRSLARNRPKTEQKLLEWVKNYPSDSKNFDTIMDPRLERQYSINAARKIAKLADHCLRKSAKDRPAMSQVVERLKQIIQESDEEQEQEQEKEQDEHDSNETNIVEVVENESVEAPLEETKSSGSTELWRKRMEHLAKLGEHVEGASRKRFMIQQRANVSS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00116 442 Pfam Protein tyrosine and serine/threonine kinase 80 356 IPR001245 GO:0004672|GO:0006468
Vifa4g00116 442 Gene3D Transferase(Phosphotransferase) domain 1 161 386 - -
Vifa4g00116 442 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00116 442 SUPERFAMILY Protein kinase-like (PK-like) 58 365 IPR011009 -
Vifa4g00116 442 Coils Coil 349 376 - -
Vifa4g00116 442 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Vifa4g00116 442 Gene3D Phosphorylase Kinase; domain 1 50 160 - -
Vifa4g00116 442 MobiDBLite consensus disorder prediction 13 49 - -
Vifa4g00116 442 CDD STKc_IRAK 81 359 - -
Vifa4g00116 442 MobiDBLite consensus disorder prediction 31 48 - -
Vifa4g00116 442 MobiDBLite consensus disorder prediction 16 30 - -
Vifa4g00116 442 MobiDBLite consensus disorder prediction 363 409 - -
Vifa4g00116 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Vifa4g00116 442 FunFam PTI1-like tyrosine-protein kinase 3 161 370 - -
Vifa4g00116 442 PANTHER OS01G0588500 PROTEIN-RELATED 38 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00116 Vifa-Chr4 14416765 14418771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00116 61 356 Glycoside Hydrolase AT3G07070 49.664 9.18e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa4g00116 PK_Tyr_Ser-Thr 5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00116 - - psat:127076679 800.816