Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00115 ATGTCCTTCAATCAATCAAAAACGGAAAAGAACGACGCCGCTTATCGAAAGTCCGGGCGATCGTCTAGCTTCAATCAGCAGAGAGGTCCTTCAGGCGCATATGGAAGGGGCAGCGGCGGACCCGCGCCATCTGCGCCGCTTTCCTCTAATAGGAGTTTTAACAAGAAGTCTAATAATGCACAAGGTGGGCACTATAGGGTGAATCCTTCCCCAGTGAATTCAACCGAGTCAAACAGTGCTTCTGCTGCTCGAACCCTACATAATGGTACTCATGTACACCCACAATTGCATGGAGCATCTGATGGGCCGGTTGCAAAGGCATCTGAATCAACCGCTGCACAGAGGAGCCCTATAGTTGTTCCAAATCCAACTTCTCAACCACCCCCCGTGAGCTCTAATACAACCACTCCTACTGGCCCCGCTAAGGGAGATGCATCAAAGGCATTCCCTTTTCAGTTTGGATCGATTGTTCCTGGCTTAATGAATGGAGTGGCTATTCCTGCTCGTACAAGCTCAGCTCCTCCTAATTTAGATGAGCAGAAGCATGATCAGGCTCATCATGACTCTGTTAGGTCCGTGCCTTCAGTGCCAATACCTCTCGTTCCGAAGCATCAGCAGCAACAACCTCCTAGGAATGATTCAGGTGTAACTGAGAAATCTAATGCCAGGGAGACTAATCTGGGTGCTAAGGCTAAAAAGGACCCTCAAGTTCCAGCTTTGATCCCGGCAAGCCAGATGCTGAAGCCTTCTGTTGTTGCTCCTGTAACTGGGATTTCAATGTCAACACCATTTCAGCAGCCTCAGGTGTCTTTACAGTTTGGTGGTCCTAATCCACAGATTCAATCTCAGGGGATGTCCTCAACACCCCTCCATCTTCCTATGCCAATGCCTATGCCAGTTGGGAATGTTCCACAAGTGCAGCAGCCGGTTTATGTTCCCGGTCTTCAGCCTCATCCAATGCACCCTCACGGGATCATGCATCCAGGCCATAACTTAAGTTTCACTCATCAAATGGGCCATCAGTTGCCCCATCAAATGGGCAACATGGGCATTGGTATCAGCCCTCAATATCCCCAGCATCAGGGTGGAAAATATGCTGCTCCTCCTCGGAAAACTACTCCCGTCAAGATAACTCATCCTGAAACGCATGAAGAGCTCAGGCTTGATAAAAGGGCAGGTGGATATTCAGATGGTGGGTCATCTGGTGCTAGGTCACATCCTAATGTACCTTCCCAATCCCAACCTGTTAAATCCATTGCCGTTTCTCAGCCTACAAATTATCATCCCTATAGTTCCAGTCCTCCCTATTATCAACCTTCTAGTTCTCTTCCATTAACAAGTAGCCAAATAACTCCCAACGCTCAGCCGCCAATATTTAATTATCCTGTGCACAATGGTCCACAAAATGTGGCTTTCATGAATTCACCGTCTCTTAGTTCTCTGCCTGTTAATCAAATAAGCCCTCCTATTCCTAGCATTGCTGAACCCCCCATTGCAGAACGTTCTCGTCAGGTGCCTACTGTGACGGCATCAGCTTCAACAGGGGTTGCTTCTGTGACTATTAAACCAAATGGTGTGTCTGCTGTTAAGGACTCATCGTTGACTGATTCTAGTATTTGTGGTGTTCAAAATACCGATGCTCGTAGTTCAGCAGCATCTTGCGATGCTAGTTCCCCTTTACCCAAAAAAGGGTCTGAAGCTTTCTCAGAAATCTCTACGCAACAGTCTAAATCTTCTGAGGAAATTTTGCCAAAACAATCTGCTGCATCTGTTGTTGTCACTGCTGATAAGGTTACAGTGCTACCTACCTCAGCTGTGGCTGAGGATTCTGTTTCTGTTGTGACAAATAATGAAGCCAGCACGAGGGAACCTATTAGTCGGTCCAACTCTTTGAAGGATAACCAGAAGAAACCCGGGAAAAAAGGCCAATCATCTAAAGATCAGGTTTCTTTGCAATCTCCTACTGTGGCTATTATGCCGTCTCGAGCTGTTGACAGTGATATATCTGAATCAGGGGTTTCCACACCTGTGGGAAGTGAAACAAACCATTCTCCTGGAGTTATTGCTCAAGTGGCTGATAGTTTGAGCAATCATAAGCATGATCTGATAGATGAATCATCCGAAGATCTGCAGTCTGCTGATTTGCCAGAAACAACGGCAAAGGAAATCAATGATAGTGCAGAGAATGCTTGCAGCGACTCTATGTCAGTTTCAGATGCTGCCGGGTCAACTTCTGATCTTTATAATGCATACAAAGGACCCGAGGAAAAGAAAGAAACTGTTTCAATTTCAGAGAGCACAGAAAGTGAAACTACATCTGAAGGGTTAAAGCAGTTATCTGCAGATTCTGCTCTGTTAGATGCTAGCATAAGTGAGAAAAGTGGTCACTCTAAAGTCGAACCTGATGACTGGGAGGATGCGGCTGACATGTCTACAAAAATTGAAGTTGATGATAAATCTCAACAGGTTATCGATGGAAGTGGAAGTACAGCGAAAAAGTATTCACGTGATTTTCTTTTGAAATTTGCAGAGCAATGCATTAGTCTTCCTGAAGGTTTTGAAATTACGGCAGACATAGCTGATGCTTTGATTAGTGCCAATATTAATAATTCTCGTGATTCACATCCTAGTCCTGGAAGAACTGGAGACAGGTCAAGGATGGAACGCCGTGGTAATGTTGTGGCTGAGGAAGACCGATGGAATAAAGGTTCCAATTCTTTTCATTCTGGGCGTGCTATGGATGGCAATGGTAGTAATGGCGGACCTCGACATGGCCAAGGAGGTAATTATGGTGTTTTAAGGAATCCTCGTGGACCGGCACCCCTTCAATATGCCGGGGGAATCCTTTCCGGGCCAATGCAGTCTGTGGGAAATCAGGGTGGAATGCAAAGAAATAGCCCTGATGGGGAGAGGTGGCAGCGTTCTCCTAGCTTCCAGCAGAGGGGCTTAATTCCTTCTCCTCAGTCTCCCTTACAGATGATGCACAGGGCTGAGAAGAAGTACGAAGTAGGTAAAGTCTCAGATGCAGAAGAGGCAAAACAGAGGCAACTGAAGGCTATCTTGAACAAACTAACTCCTCAGAATTTCGATAGACTTTTTGAACAAGTTAAAGCAGTTAATATTGACAATGCAGTCACTCTCACTGGTGTCATCTCACAAATCTTCGAGAAGGCTCTGATGGAGCCTACCTTCTGTGAAATGTATGCCAACTTCTGCTCACATCTGGCTCTTGAATTGCCTGATTTGAGTGAGGACAATGAAAAGATAACTTTTAAGAGGTTATTATTAAACAAATGCCAAGAGGAATTTGAGAGGGGTGAAAGAGAACAAGAAGAGGCAAATAAGGTTGATGAGGGAGAGGTCAAACTGTCAAATGAAGAAAGGGAGCAGAGAAGAACAAAGGCAAGAAGGCGCATGTTAGGAAATATCAGATTGATTGGAGAACTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCACGAGTGTATCAAGAAGTTACTTGGTCAGTGTCAGGATCCTGATGAAGAAGATGTTGAAGCTTTGTGCAAGCTGATGAGTACTATTGGGGAGATGATTGACCATCCCAAAGCCAAGGAACATATGGATGTATATTTTGAAAGGTTGAAAATCTTATCAAACAACATGAATTTATCTTCTAGGGTGAGGTTTATGTTGAAGGATGTAATTGATTTGAGAAGAAATAGATGGCAACAAAGGAGGAAAGTTGATGGTCCAAAGAAGATTGAAGAAGTGCACAGAGATGCTGTGCAAGAGAGGCAGGCTCAAGCTCAAGCTGGTAGGATGGGTCGTGGTATGGGAAACAATCAATCTGCAAGAAGGAACCCTATGGATTTTGGTCCTAGAGGATCATCGATGATGTCTCCTACTGCTCAGATGGGTGGACCACGCGGGCTCTCTTCTCCAGCCCGTGGATATGGTGGTTTACAGGATGCTCGTTTTGAAGAAAGGCAATCTTATGAGCCTAGGACTTTGTCAGTTAATTTACCTCAAAGACCCTTGGGTAATGATTCTATAACATTGGGACCCCAGGGTGGTCTTGCTAGGGGAATGTCCAGCAGAGGATCAACAGCAGTTTCAAATTTGTCAATGCCAGATGTGCATTCTGGCCATGGAGACTCTCACAGAATGCAGAGCGGTATTAATGGTTATAACAATTCATCTGAGCGCACGCCATATGGCTCAAGGGAGGATCCTGCATCAAGATATATTTCAGACAGATCTTCAAGTCTAGCTGGATATGATCATTCAAATGCTCCAGAGCATAATATAAACTATGCTAACAGAGACTTGAGGAATGATGATCGGAATCTCGGCAGACCTGTTGCAACTTCACCTCATCCTCAGTTGCAAGGGCCAATTGTCTCCCAAAATGCCTCCTCAGAGGTGGTTTTGTCAGAGGAAAAACTACAGGAAATGTCCTTGTCAGCAATCAGAGAATACTACAGTGCTAGAGATGTAAACGAGCTTGCTCAATGTATCAAAGATTTGAACTCTCCAAACTTTCATCCTTCCATGGTTTCTCTATGGGTGATAGACTCGTTTGAGAGAAAGAACACTGAAAGAGATCTTTTGGCCAAACTGCTTGTCAAACTTGGGAAATCTCAGGATGGCCTTTTGACCCAAACTCAGTTTATTGAAGGGTTCGAGGCGGTTCTCAGTAATTTGGAGGATGCTGTTAATGATGCCCCCAAGGCGCCAGAGTTTCTTGGCCGTATTTTTGCAGAACTTATATCAGAGAGTTTAGTCGGTTTGGATGAGATTGGGCAGTTAATACATGATGGTGGAGAGGATCCCGGCAATCTCTTAAAGTTTGGACTTGCGGCTGATGTTCTTGGAAGCACATTGGAGGCTATAAAACACGAGAAAGGGGACGTAGTTCTAAGCGAGATTCAGAAAAGCTCAAATTTGCAGTTGGAGTCTTTCCGACCACCTAATAATTCTAGTACATCAAGGAAGTTGGAGAAATTTATTTAG 4998 0.4474 MSFNQSKTEKNDAAYRKSGRSSSFNQQRGPSGAYGRGSGGPAPSAPLSSNRSFNKKSNNAQGGHYRVNPSPVNSTESNSASAARTLHNGTHVHPQLHGASDGPVAKASESTAAQRSPIVVPNPTSQPPPVSSNTTTPTGPAKGDASKAFPFQFGSIVPGLMNGVAIPARTSSAPPNLDEQKHDQAHHDSVRSVPSVPIPLVPKHQQQQPPRNDSGVTEKSNARETNLGAKAKKDPQVPALIPASQMLKPSVVAPVTGISMSTPFQQPQVSLQFGGPNPQIQSQGMSSTPLHLPMPMPMPVGNVPQVQQPVYVPGLQPHPMHPHGIMHPGHNLSFTHQMGHQLPHQMGNMGIGISPQYPQHQGGKYAAPPRKTTPVKITHPETHEELRLDKRAGGYSDGGSSGARSHPNVPSQSQPVKSIAVSQPTNYHPYSSSPPYYQPSSSLPLTSSQITPNAQPPIFNYPVHNGPQNVAFMNSPSLSSLPVNQISPPIPSIAEPPIAERSRQVPTVTASASTGVASVTIKPNGVSAVKDSSLTDSSICGVQNTDARSSAASCDASSPLPKKGSEAFSEISTQQSKSSEEILPKQSAASVVVTADKVTVLPTSAVAEDSVSVVTNNEASTREPISRSNSLKDNQKKPGKKGQSSKDQVSLQSPTVAIMPSRAVDSDISESGVSTPVGSETNHSPGVIAQVADSLSNHKHDLIDESSEDLQSADLPETTAKEINDSAENACSDSMSVSDAAGSTSDLYNAYKGPEEKKETVSISESTESETTSEGLKQLSADSALLDASISEKSGHSKVEPDDWEDAADMSTKIEVDDKSQQVIDGSGSTAKKYSRDFLLKFAEQCISLPEGFEITADIADALISANINNSRDSHPSPGRTGDRSRMERRGNVVAEEDRWNKGSNSFHSGRAMDGNGSNGGPRHGQGGNYGVLRNPRGPAPLQYAGGILSGPMQSVGNQGGMQRNSPDGERWQRSPSFQQRGLIPSPQSPLQMMHRAEKKYEVGKVSDAEEAKQRQLKAILNKLTPQNFDRLFEQVKAVNIDNAVTLTGVISQIFEKALMEPTFCEMYANFCSHLALELPDLSEDNEKITFKRLLLNKCQEEFERGEREQEEANKVDEGEVKLSNEEREQRRTKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQCQDPDEEDVEALCKLMSTIGEMIDHPKAKEHMDVYFERLKILSNNMNLSSRVRFMLKDVIDLRRNRWQQRRKVDGPKKIEEVHRDAVQERQAQAQAGRMGRGMGNNQSARRNPMDFGPRGSSMMSPTAQMGGPRGLSSPARGYGGLQDARFEERQSYEPRTLSVNLPQRPLGNDSITLGPQGGLARGMSSRGSTAVSNLSMPDVHSGHGDSHRMQSGINGYNNSSERTPYGSREDPASRYISDRSSSLAGYDHSNAPEHNINYANRDLRNDDRNLGRPVATSPHPQLQGPIVSQNASSEVVLSEEKLQEMSLSAIREYYSARDVNELAQCIKDLNSPNFHPSMVSLWVIDSFERKNTERDLLAKLLVKLGKSQDGLLTQTQFIEGFEAVLSNLEDAVNDAPKAPEFLGRIFAELISESLVGLDEIGQLIHDGGEDPGNLLKFGLAADVLGSTLEAIKHEKGDVVLSEIQKSSNLQLESFRPPNNSSTSRKLEKFI 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 1411 1431 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 201 224 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 727 776 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 667 684 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 868 928 - -
Vifa4g00115 1665 FunFam Eukaryotic translation initiation factor 4G 1014 1249 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 1328 1345 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 1 147 - -
Vifa4g00115 1665 ProSiteProfiles MI domain profile. 1476 1600 IPR003891 -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 877 904 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 167 237 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 614 628 - -
Vifa4g00115 1665 FunFam Eukaryotic translation initiation factor 4G 1470 1664 - -
Vifa4g00115 1665 Pfam MIF4G domain 1014 1235 IPR003890 GO:0003723|GO:0005515
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 1357 1371 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 727 745 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 354 451 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 567 585 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 1258 1460 - -
Vifa4g00115 1665 Gene3D - 1469 1665 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 958 987 - -
Vifa4g00115 1665 SMART if4_15 1014 1236 IPR003890 GO:0003723|GO:0005515
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 376 392 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 614 684 - -
Vifa4g00115 1665 Gene3D - 1014 1249 - -
Vifa4g00115 1665 SUPERFAMILY ARM repeat 1008 1238 IPR016024 -
Vifa4g00115 1665 SUPERFAMILY ARM repeat 1472 1662 IPR016024 -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 644 659 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 958 990 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 544 586 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 17 32 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 1382 1401 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 401 451 - -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 43 88 - -
Vifa4g00115 1665 Coils Coil 1096 1116 - -
Vifa4g00115 1665 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 351 1665 IPR045208 GO:0003743
Vifa4g00115 1665 Pfam MA3 domain 1483 1587 IPR003891 -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 1106 1132 - -
Vifa4g00115 1665 SMART ma3_7 1477 1591 IPR003891 -
Vifa4g00115 1665 MobiDBLite consensus disorder prediction 629 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00115 Vifa-Chr4 13977007 13984743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00115 1 558 Eukaryotic Initiation Factors Gene Family AT3G60240 37.500 8.36e-76 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00115 K03260 - gmx:100798562 2021.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00115 4 13977007 13984743 Vifa4g00115 4 13977007 13984743 ECH
Vifa4g00115 4 13977007 13984743 Vifa5g00843 5 248095359 248102578 PCT