Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00099 ATGCCTCCAAAGACGCCGAAGAGAGGGTCTGCATCCGGTGGTGCAAAGAGGGGTGGCAGACCATCGAGAGGGACTCCCAAGGCGGCACAGAATCAACCTGAAGCCGTGGAAGAGAAGATGGTGGTCGAAGAGGAGCCTAAGGTAGAAGAGAATCCTGCTGTTGAGGAAAAGCCTGTGGTGGAAGAGAATCCTGTTGTTGAGGATAAAGCTATTGATGTGAATCAAACAAAATCAGAGGCTTCAGAAGAATTGGGGTCTGCGGTGAAAAAAGATGAAGAGGAGGTTAAAGAGTCTATAGATGAATATGAGAAGGATGAACGTCTAGATTTAGAGGATAATGAGCCTGAATATGAACCTGAGGAGTATGGCGGAGTTGATTATGATGAGAAGGAAATTGAACAGGAAGAAGGTCAAGAGGTGGGAGATGAAGTTGAGGAAGAAGCTGAAGACAATGTTGCTGAAGAAGAAGTTGATTCTGGTGAAGAAGTCGAAGATGGTCACGATGAAATGGAGGAGGGTGAAGAGGATGATGAGCATGCCGGTGAGGAGCATGAGCATGAGCAGGCAGAGTTGGGTGATGTGGAAGAAGAGGAACATCGCGAGGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACAGAAGATGATCTGAAGAAGGTTTTCGGTGAAGTTGGGGTTGTTACTGAGGTCAGGCTGATGATGAATCCTCAAACTAAAAAAAATAAGGGATTTGCATTCTTGCGTTTTGAAAACGTGGATCAAGCAAAACGAGCTGTAGCAGAGCTTAAAAATCCAGTGATCAACGGCAAACAATGTGGTGTTACTCCAAGTCAGGATAGTGATACTCTCTATTTAGGAAACATATGCAAGACATGGACAAAAGAAGCTTTAAAGGAGAAACTGAAGCATTATGGAGTTACAAATGTTGAGGATGTCACTTTGGTTGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCGTTCTTGGAATTTTCCTCACGTTCAGATGCTATGGATGCCTTTAAGAGGCTGCAGAAAAGGGATGTTGTGTTCGGAGTTGATAAGCCTGCAAAGGTTTCATTCGCAGATTCTTTTATTGACCCTGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAATCTTCTCAAGAAATATGGTGAGGTTGAAAAGATTGAGCTTGCCAGGAACATGCCAGCTGCTCGTAGGAAAGACTATGGGTTTGTTACCTTTGGCTCACATGATGCGGCTATAAGATGTGCTGAAAGCATTACTGGTACAGAATTGGGTGAAGGGGAGAAGAAGGCAAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAAAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTACCGCCCGAGCCGTGGATCTGCAATATTGTCAAGGCCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGCGGGGTAAGAGGAATTGGAAGCCGTGCACTTCCAGTCAGGCCTATTAGTGCTAGAGATAGACGCCCTGTCGTGTCTATACCAGTTAGAAGCAGGCCACTACCTCCTCCAGTTAGATCTTATGATAGGAGAGCAGCTGCCCCTGCATATTCAAAAAGTAGCTTGAAGCGGGATTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCAAGAGTGGCCTCTGAAAGGCGCCCATCTTATAGGGATTATCCACCCCGTGGATCTGACTATTCTGATCTCCCTAGAAGTTCATCTCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTTTGAGAGGCCCCCTCCTCCACCCCCTCCCCATTCAAGTTATCGTGAAGGGCGTCCTCGTGATTATGATGCTCCTCTACCTGGATCAAAACGTTCTTATGCTGCTGTGGATGATGTTCCCCCTCGATACGCTGATACCGGTGCTCGTCAATCAAGAGCTCGAGTGGAATATGATTATGGGGGAAGTGCTTCACAATATGGTGATGCTTATGGTGATAGAGTTGGAAGATCGAGTCTTGGATATGGCAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGAATCACACGGGATGTATAGCAGTCGGCAGGGAACGGGTTATGGTGGAGGATCTTATGGTGGTAGTGATGTTGGAGGCATGTACTCTTCAAGTTATGGTGGTGATTACGTTTCTCGTGGAAGTGATGTCGGCGGAAGCTCGTATTCGTCAATGTATTCTGGCAGAGGTGCGGGCGGCGGTAGCAGTTACATGGGCAGCGGTGGATCAGGATCTTATTATTGA 2391 0.4672 MPPKTPKRGSASGGAKRGGRPSRGTPKAAQNQPEAVEEKMVVEEEPKVEENPAVEEKPVVEENPVVEDKAIDVNQTKSEASEELGSAVKKDEEEVKESIDEYEKDERLDLEDNEPEYEPEEYGGVDYDEKEIEQEEGQEVGDEVEEEAEDNVAEEEVDSGEEVEDGHDEMEEGEEDDEHAGEEHEHEQAELGDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLKKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVDQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDVTLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGEKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSAILSRPSWSRPAPRSFSSRGVRGIGSRALPVRPISARDRRPVVSIPVRSRPLPPPVRSYDRRAAAPAYSKSSLKRDYGRREDLPPPRSRVAADYGSRVASERRPSYRDYPPRGSDYSDLPRSSSRAAPRRGYVDDGYSQRFERPPPPPPPHSSYREGRPRDYDAPLPGSKRSYAAVDDVPPRYADTGARQSRARVEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQESHGMYSSRQGTGYGGGSYGGSDVGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGGSSYMGSGGSGSYY 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00099 796 MobiDBLite consensus disorder prediction 1 202 - -
Vifa4g00099 796 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 143 292 - -
Vifa4g00099 796 Gene3D - 293 375 IPR012677 -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 83 103 - -
Vifa4g00099 796 CDD RRM_SF 214 285 - -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 470 513 - -
Vifa4g00099 796 Coils Coil 88 108 - -
Vifa4g00099 796 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 128 796 - -
Vifa4g00099 796 SUPERFAMILY RNA-binding domain, RBD 290 457 IPR035979 GO:0003676
Vifa4g00099 796 CDD RRM_SF 391 456 - -
Vifa4g00099 796 FunFam Heterogeneous nuclear ribonucleoprotein Q 293 375 - -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 37 76 - -
Vifa4g00099 796 FunFam RNA recognition water-stress protein1 379 500 - -
Vifa4g00099 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 389 471 IPR000504 GO:0003723
Vifa4g00099 796 SUPERFAMILY RNA-binding domain, RBD 207 290 IPR035979 GO:0003676
Vifa4g00099 796 CDD RRM_SF 294 361 - -
Vifa4g00099 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Vifa4g00099 796 MobiDBLite consensus disorder prediction 104 181 - -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 564 578 - -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 536 681 - -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 770 796 - -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 711 733 - -
Vifa4g00099 796 Gene3D - 379 493 IPR012677 -
Vifa4g00099 796 Gene3D - 126 292 IPR012677 -
Vifa4g00099 796 MobiDBLite consensus disorder prediction 182 202 - -
Vifa4g00099 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Vifa4g00099 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 391 456 IPR000504 GO:0003723
Vifa4g00099 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 360 IPR000504 GO:0003723
Vifa4g00099 796 SMART rrm1_1 293 372 IPR000504 GO:0003723
Vifa4g00099 796 SMART rrm1_1 213 286 IPR000504 GO:0003723
Vifa4g00099 796 SMART rrm1_1 390 465 IPR000504 GO:0003723
Vifa4g00099 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 376 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00099 Vifa-Chr4 11981768 11986028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00099 214 459 Eukaryotic Initiation Factors Gene Family AT4G34110 24.031 2.89e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00099 - - aprc:113850151 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00099 4 11981768 11986028 Vifa4g00099 4 11981768 11986028 ECH
Vifa4g00099 4 11981768 11986028 Vifa5g01718 5 502806477 502811784 PCT