Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00089 ATGGAAGGAGAAAGAGATGTTCCTAATTATGAACTTCAAGTTTCATTCACAAACACTCCTCAAACCATCCATGAAATGAGTTTTGTTCAATTTGAAGAAAATCAAGTTCTTAGCTTCTTGTCTCCATCTACACAATCTCAACCTTCTCAGCTTTCTCAATCTCTAAACTCCGGCGGTAGCTCCACCCCCGCAGCTACCGCTGCTGCCGTCTCAGCAACCACCACAGCCGCCGCCGGATTCAGCCCTAATGATCTTGTCACTAGAACTCCTTGGAATAATGAACAGGTGAGAACTCTAGATCCCAAAGCTGTTGTAAGTGATGAGAATTGCACTGGAAATACTAGTGATGGCAACAACACTTGGTGGAGGAGTGGAGGAAGTGAGAAGAACAAGGTGAAAGTGAGGAGAAAGCTAAGAGAGCCAAGGTTTTGTTTTCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAGTATGGTCAGAAAGTTGTTAAGAATAGCCTTCATCCAAGAAGTTACTACCGTTGCACACATAACAACTGTCGGGTGAAAAAAAGAGTTGAGCGACTCTCAGAAGATTGTCGTATGGTGATAACCACTTATGAAGGAAGACACAATCACTCTCCATGCGACGACTCTAATTCTTCTGAACACGAATGTTTTACTTCTTTTTGA 687 0.425 MEGERDVPNYELQVSFTNTPQTIHEMSFVQFEENQVLSFLSPSTQSQPSQLSQSLNSGGSSTPAATAAAVSATTTAAAGFSPNDLVTRTPWNNEQVRTLDPKAVVSDENCTGNTSDGNNTWWRSGGSEKNKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNSSEHECFTSF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00089 228 SMART WRKY_cls 154 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g00089 228 MobiDBLite consensus disorder prediction 40 63 - -
Vifa4g00089 228 Gene3D WRKY domain 140 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g00089 228 Pfam WRKY DNA -binding domain 155 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g00089 228 SUPERFAMILY WRKY DNA-binding domain 146 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g00089 228 MobiDBLite consensus disorder prediction 107 126 - -
Vifa4g00089 228 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 215 IPR044810 GO:0003700
Vifa4g00089 228 FunFam WRKY transcription factor 57 140 214 - -
Vifa4g00089 228 MobiDBLite consensus disorder prediction 106 126 - -
Vifa4g00089 228 ProSiteProfiles WRKY domain profile. 149 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00089 Vifa-Chr4 11569813 11577194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00089 3 228 WRKY Transcription Factor Family AT2G44745 59.402 4.27e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g00089 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00089 - - var:108347245 363.999