Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00088 ATGGATATTCTTATTGTGAAAGCACAGAAGATTGAGAGGGATGACACATATTTTGCTCTTCCAAAGCTGATTGAGAAGCCAGTAATAAACTACTCCCAACTTGTCTCATTCCCAAAGTCGTTGTGTTATCAGTTGAGTGCGTTGATTTTGCCCGGCATTACGCTTGTTGTTAGTCCATTGCTAGCTTTGATGATTGATCAGCTTAAGCAATTGCCTCCACTCATTTCTGGTGCTCGAAGTACGCTTGAAGAATCATCTGAAACTCTCAGCCAGCTTCGGCAAGGCGCAATAAAGGTGCTTTTTGTTTCACCCGAGCGGTTTTTGAATAAGGAGTTTCTGTCTGCTATCTCTGCTGGGTCAGCTGTCTCACTCGTTGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCATTACTTCATAGAAGTCTTAATGTAGGTTCTGTTCTCGCAATGACAGCAACTGCTACAACCACAACCTTAGATGCCATCATGTCTGCCCTAGATATTCCTTTTACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCGGCGTCTTTGATAAAAAATAGAATGAAAGACCTACTGGTTCTGATAAAGTCTCCTCCTTTTGTGGATGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGAAACTGATCAAATTAGCAGATACTTGAATGATAACAATATCTCGGCAAAGAGTTATCATAGTGGTATTTTTGCAAAGGAACGTGGCAACGTACAGGAGTTGTTTGCTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGTATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCTGGAAGTCTGGAAGAGTATGTACAGGAAATAGGACGTGCTGGGAGAGATGGAAGGTTGTCCTACTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTCCGTAGTCTAATGTACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGTCTGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATATGTTCGTTAATCAAAGAATCTGCTTCACGCAGATTTGACATGAAGGAAGAGACTTTTGTAACATCCAGTTGGGAGTTGGCCATACTGATATATTGA 1197 0.4002 MDILIVKAQKIERDDTYFALPKLIEKPVINYSQLVSFPKSLCYQLSALILPGITLVVSPLLALMIDQLKQLPPLISGARSTLEESSETLSQLRQGAIKVLFVSPERFLNKEFLSAISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHRSLNVGSVLAMTATATTTTLDAIMSALDIPFTNLIQNAHLRDNLRLSASLIKNRMKDLLVLIKSPPFVDVKSIIVYCKFQSETDQISRYLNDNNISAKSYHSGIFAKERGNVQELFASNKIRVVVATVAFGMGLDKRDVGAVIHYSLPGSLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFLSEVFPADKSSCGKICSLIKESASRRFDMKEETFVTSSWELAILIY 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00088 398 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 123 132 IPR002464 -
Vifa4g00088 398 Gene3D - 193 386 IPR027417 -
Vifa4g00088 398 NCBIfam RecQ family ATP-dependent DNA helicase 39 356 IPR004589 GO:0004386|GO:0006310
Vifa4g00088 398 Gene3D - 33 184 IPR027417 -
Vifa4g00088 398 SMART helicmild6 237 318 IPR001650 -
Vifa4g00088 398 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 207 357 IPR001650 -
Vifa4g00088 398 PANTHER DNA HELICASE RECQ FAMILY MEMBER 39 381 - -
Vifa4g00088 398 FunFam ATP-dependent DNA helicase Q-like 5 194 385 - -
Vifa4g00088 398 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 39 186 IPR014001 -
Vifa4g00088 398 CDD SF2_C_RecQ 194 327 - -
Vifa4g00088 398 Pfam DEAD/DEAH box helicase 53 172 IPR011545 GO:0003676|GO:0005524
Vifa4g00088 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 330 IPR027417 -
Vifa4g00088 398 Pfam Helicase conserved C-terminal domain 223 317 IPR001650 -
Vifa4g00088 398 SMART ultradead3 8 200 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00088 Vifa-Chr4 10537474 10540984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00088 223 350 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 1.06e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00088 K10730 - gmx:100811214 560.836