Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00068 ATGGAGAGGTTTTCAGAGCAGAACGTACTTCCTAGAAACTTGCCTATTTTGGTTGAGGTTTCGCCCAATATGGGAACTGCCAGAGAGACGCTTCCAAGGATAAATGGCCATGACATTTCGAATGCTAGGTGGATTTCAGCTAGAGAATTGAATCAGTTGTCGCAGGCAAGGGATGTTAACGGGAATATGACACGTTTGGCTTCGATTAGAGAAGTGGCACACTTGTCGAATGCAAGGATACTATTGGTTAGAGATGATATGGAATTTGATACTAGAGAGTCGCCCGAGTCTATCTCATTTGAGCCTACTAGAACATGGAAAGGAAATGCATCTTTTTTAGAAGGAGAAGATTTGATGTATGATGTGGACACGTTGAAGGGAAGCAGCGATTCATTTGAGGACGGTGATCCGAGTTTATTTGCTGGTGCTAGTCATCCCCCTGAGCCTGTTGATACAGATCTTATGAGAACGGTTTATGTACCCATAGGTCAAAACAAATCTGAGGCTGGATGCTTACTTAAGAACTTGTCCATGAAGGGTCCTTTCCTAGAAGATCTCTCCATCCGTGTTCCTGCGAAGAAACCAAGTCCAATTGTTCTTTCCCCTCAAGGAAGTCTAGGTGAAGAACTAAACGACACGGGGAACTTATCCTCCCCATTTGCAGGTTCTCGAGCATCTCAGAATACAGACAACTCTCTCCTTGCACCAGATTCAGAGGAAAAGGAATGTGTTTGGGATGCTTCTTTGCCTCCTACTCCTAGTGGCGATGTCAGTCCACATAGTAGTATTGATAGTATTGGTGTTGTCAAGGCAATGAGCATTGCTAATAGTTGCGCTAGTACATATCGGAGCGATGCAGTCACCAGTGATGCCATGCTTAGTTTAGATAGGAACTTTGATAGCATTAAGGGTAGTGTAAGGGGTGATTCACTCGAGAGTGCGAAAACTAGTGCCAGTCGTGCAAGCGATAGCAGTGGCCTCAGTGATGACAGTAATTGGAGCAACCTTACCGGTAGTGCCAATAAGCCTCACAAAGGAAATGATCCCAGGTGGAATGCTATTCTTGCTGTTCGATTACGGGATGGAATTTTGGGTATGAGTCATTTTAGATTACTCAAACGACTTGGATGTGGTGACATTGGGAGTGTATATCTCTCAGAGCTGAGTGGAACCCGGTGTTATTTTGCAATGAAAGTTATGGATAAGGCATCCTTAGCAAGCAGAAAGAAGCTAACTAGAGCACAGACAGAAAGAGAGATATTGCAGTTGCTAGACCATCCATTTCTTCCAACTTTGTATACACATTTTGAGACTGACCGTTTCTCCTGTTTGGTAATGGAATATTGTCCTGGTGGTGACCTGCACACTCTAAGGCAGCGGCAACCTGGGAAACATTTCTCTGAATATGCTGCACGCTTCTATGCTGCTGAGGTACTGCTTGCTCTTGAATATCTTCACATGCTTGGAGTTGTGTACAGAGACCTTAAACCTGAAAATGTGTTGGTCCGAGACGATGGTCACATAATGCTCTCAGATTTTGATCTTTCCCTCAGATGTACTGTTTTGCCAACTCTTATTAGAGCTTTTGACGGCGACCCTTCAAAACGGGCTGGTGGTGCATTCTGTGTTCAACCAGCTTGTATTGAGCCATCATCAGTATGCATACAACCTGCATGTTTTATTCCTCGTCTCTTTCCTCAGAAAAACAAGAAATCAAGAAAGCCGAGAGCTGAACCTGGGTTTCCTTCCAGCAGACTTCCCGAGCTTGTAGCTGAGCCTACTGCTGCTCGATCTATGTCATTTGTCGGTACCCACGAATACCTTGCCCCTGAAATTATCAAAGGGGAAGGTCATGGAAGTGCAGTTGATTGGTGGACATTTGGAATATTCTTGCATGAATTATTATATGGCAAAACCCCTTTCAAAGGGTCAGGAAACCGTGCTACGCTTTTCAATGTAGTAGGTCAGCAGCTCAAGTTTCCCGAGTCTCCTGCGACCAGTTACGCTAGCAGGGATCTGATCCGCGGCTTACTGGTGAAGGAGCCGCAGCATCGTCTCGGGGTTAAAAGAGGCGCAACTGAGATCAAACAGCATCCTTTCTTTGAAGGCGTGAACTGGGCATTGATTAGGTGCAGCACTCCACCAGAAGTACCAAGACCAGTGGAAAACGAACCGCCGCCGCCACCACCAATGAAGGTTGGACCAGCAATTGATGCTGTTGGGTTTGGCAGTACTAGTAAGAGGATGTCAGGTAACAATGAAATGAAGCCTGGTGGGGGTAAATATCTGGATTTTGAGTTCTTTTAA 2307 0.4525 MERFSEQNVLPRNLPILVEVSPNMGTARETLPRINGHDISNARWISARELNQLSQARDVNGNMTRLASIREVAHLSNARILLVRDDMEFDTRESPESISFEPTRTWKGNASFLEGEDLMYDVDTLKGSSDSFEDGDPSLFAGASHPPEPVDTDLMRTVYVPIGQNKSEAGCLLKNLSMKGPFLEDLSIRVPAKKPSPIVLSPQGSLGEELNDTGNLSSPFAGSRASQNTDNSLLAPDSEEKECVWDASLPPTPSGDVSPHSSIDSIGVVKAMSIANSCASTYRSDAVTSDAMLSLDRNFDSIKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNLTGSANKPHKGNDPRWNAILAVRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLASRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCTVLPTLIRAFDGDPSKRAGGAFCVQPACIEPSSVCIQPACFIPRLFPQKNKKSRKPRAEPGFPSSRLPELVAEPTAARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLKFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVENEPPPPPPMKVGPAIDAVGFGSTSKRMSGNNEMKPGGGKYLDFEFF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00068 768 FunFam Serine/threonine-protein kinase D6PK-like 367 452 - -
Vifa4g00068 768 MobiDBLite consensus disorder prediction 199 261 - -
Vifa4g00068 768 PANTHER FLIPPASE KINASE 1-RELATED 138 724 - -
Vifa4g00068 768 CDD STKc_phototropin_like 367 717 - -
Vifa4g00068 768 Gene3D Transferase(Phosphotransferase) domain 1 453 519 - -
Vifa4g00068 768 Pfam Protein kinase domain 370 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00068 768 Pfam Protein kinase domain 598 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00068 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Vifa4g00068 768 Gene3D Phosphorylase Kinase; domain 1 367 452 - -
Vifa4g00068 768 MobiDBLite consensus disorder prediction 310 342 - -
Vifa4g00068 768 FunFam serine/threonine-protein kinase D6PK-like 453 520 - -
Vifa4g00068 768 Gene3D Transferase(Phosphotransferase) domain 1 597 718 - -
Vifa4g00068 768 ProSiteProfiles Protein kinase domain profile. 369 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00068 768 MobiDBLite consensus disorder prediction 206 234 - -
Vifa4g00068 768 MobiDBLite consensus disorder prediction 310 345 - -
Vifa4g00068 768 SUPERFAMILY Protein kinase-like (PK-like) 350 729 IPR011009 -
Vifa4g00068 768 SMART serkin_6 369 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00068 768 FunFam serine/threonine-protein kinase D6PK-like 596 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00068 Vifa-Chr4 7527277 7529931 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00068 1 768 AGC Kinase Gene Family AT2G44830 65.140 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa4g00068 Pkinase 2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00068 - - mtr:25500048 1363.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00068 4 7527277 7529931 Vifa4g00068 4 7527277 7529931 ECH
Vifa4g00068 4 7527277 7529931 Vifa5g01748 5 510486819 510489237 PCT