Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00065 ATGAACACTCATGGTTGGAGCAACAATGCAAACCCCTTTGAAATTTTTGAATCTACCGTAACGACCACGTTTCATGACACTTCAGCTCCGGCAGCAGCGGCGGTGCCAATCTCCCGGAATCCGAGTCTTCGTAGCATTTTAATGGCGGAGAATTGGGCAGAGCTACCGTTGAAGGAGGATGATACCGACGACATGGTCATCTACGGGACTTTGCGCGAGGCTGCTGCTACAACAGGCTGGTTCCCAGGTAATGGGGTGAACAATGTCGATGTAGGCCTAAAAGTTGAAGATCAAGGTGAAAACAGTAGCACTGCAGCGGCGCGTGTGGTTCACACACCACCAACAAATAGTAAAAAGTTAGGTTTCCGTGGAGTTAGGAGAAGGCCTTGGGGAAAGTATGCTGCTGAGATAAGAGATCCTAAGAGAAACGGCGCAAGGGTGTGGCTTGGGACTTACGAAACGGCTGAGAATGCAGCTTTGGCTTATGATCGAGCCGCGTTTAAAATACACGGTTCCAAAGCTAAGCTGAATTTTCCTCACTTGATCGATTCAGATTACACTGGATCGGTTAAAATCATACGAAAAGAGCGCTAG 594 0.4832 MNTHGWSNNANPFEIFESTVTTTFHDTSAPAAAAVPISRNPSLRSILMAENWAELPLKEDDTDDMVIYGTLREAAATTGWFPGNGVNNVDVGLKVEDQGENSSTAAARVVHTPPTNSKKLGFRGVRRRPWGKYAAEIRDPKRNGARVWLGTYETAENAALAYDRAAFKIHGSKAKLNFPHLIDSDYTGSVKIIRKER 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00065 197 ProSiteProfiles AP2/ERF domain profile. 121 179 IPR001471 GO:0003700|GO:0006355
Vifa4g00065 197 Gene3D AP2/ERF domain 121 180 IPR036955 GO:0003700|GO:0006355
Vifa4g00065 197 FunFam Ethylene-responsive transcription factor 2 120 180 - -
Vifa4g00065 197 CDD AP2 122 181 IPR001471 GO:0003700|GO:0006355
Vifa4g00065 197 PANTHER DNA-BINDING DOMAIN 103 180 IPR044808 GO:0003700|GO:0009873
Vifa4g00065 197 SMART rav1_2 121 185 IPR001471 GO:0003700|GO:0006355
Vifa4g00065 197 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Vifa4g00065 197 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Vifa4g00065 197 Pfam AP2 domain 121 171 IPR001471 GO:0003700|GO:0006355
Vifa4g00065 197 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00065 Vifa-Chr4 7385164 7385757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00065 39 197 AP2-EREBP Transcription Factor Family AT2G44840 51.572 3.15e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g00065 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00065 K09286 - gmx:100793366 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00065 4 7385164 7385757 Vifa4g00065 4 7385164 7385757 ECH
Vifa4g00065 4 7385164 7385757 Vifa5g01761 5 513987669 513988295 PCT