Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g00065 | ATGAACACTCATGGTTGGAGCAACAATGCAAACCCCTTTGAAATTTTTGAATCTACCGTAACGACCACGTTTCATGACACTTCAGCTCCGGCAGCAGCGGCGGTGCCAATCTCCCGGAATCCGAGTCTTCGTAGCATTTTAATGGCGGAGAATTGGGCAGAGCTACCGTTGAAGGAGGATGATACCGACGACATGGTCATCTACGGGACTTTGCGCGAGGCTGCTGCTACAACAGGCTGGTTCCCAGGTAATGGGGTGAACAATGTCGATGTAGGCCTAAAAGTTGAAGATCAAGGTGAAAACAGTAGCACTGCAGCGGCGCGTGTGGTTCACACACCACCAACAAATAGTAAAAAGTTAGGTTTCCGTGGAGTTAGGAGAAGGCCTTGGGGAAAGTATGCTGCTGAGATAAGAGATCCTAAGAGAAACGGCGCAAGGGTGTGGCTTGGGACTTACGAAACGGCTGAGAATGCAGCTTTGGCTTATGATCGAGCCGCGTTTAAAATACACGGTTCCAAAGCTAAGCTGAATTTTCCTCACTTGATCGATTCAGATTACACTGGATCGGTTAAAATCATACGAAAAGAGCGCTAG | 594 | 0.4832 | MNTHGWSNNANPFEIFESTVTTTFHDTSAPAAAAVPISRNPSLRSILMAENWAELPLKEDDTDDMVIYGTLREAAATTGWFPGNGVNNVDVGLKVEDQGENSSTAAARVVHTPPTNSKKLGFRGVRRRPWGKYAAEIRDPKRNGARVWLGTYETAENAALAYDRAAFKIHGSKAKLNFPHLIDSDYTGSVKIIRKER | 197 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g00065 | 197 | ProSiteProfiles | AP2/ERF domain profile. | 121 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa4g00065 | 197 | Gene3D | AP2/ERF domain | 121 | 180 | IPR036955 | GO:0003700|GO:0006355 | |
Vifa4g00065 | 197 | FunFam | Ethylene-responsive transcription factor 2 | 120 | 180 | - | - | |
Vifa4g00065 | 197 | CDD | AP2 | 122 | 181 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa4g00065 | 197 | PANTHER | DNA-BINDING DOMAIN | 103 | 180 | IPR044808 | GO:0003700|GO:0009873 | |
Vifa4g00065 | 197 | SMART | rav1_2 | 121 | 185 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa4g00065 | 197 | PRINTS | Ethylene responsive element binding protein signature | 122 | 133 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa4g00065 | 197 | PRINTS | Ethylene responsive element binding protein signature | 145 | 161 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa4g00065 | 197 | Pfam | AP2 domain | 121 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Vifa4g00065 | 197 | SUPERFAMILY | DNA-binding domain | 121 | 180 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g00065 | Vifa-Chr4 | 7385164 | 7385757 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g00065 | 39 | 197 | AP2-EREBP Transcription Factor Family | AT2G44840 | 51.572 | 3.15e-51 | 163 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vifa4g00065 | AP2 | 7.9e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g00065 | K09286 | - | gmx:100793366 | 241.891 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa4g00065 | 4 | 7385164 | 7385757 | Vifa4g00065 | 4 | 7385164 | 7385757 | ECH | |
Vifa4g00065 | 4 | 7385164 | 7385757 | Vifa5g01761 | 5 | 513987669 | 513988295 | PCT |