Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00056 ATGGCTGACAAAGATGATGAGTTTTGTTTGGGTTTGAGCTTGAGTTTAGGCTGTGGAGATTACGAAAAGGAGAAAATTATAAACCAAACTCCTATCAATGTTATTCAGCTGCAAAAACCTCTTCCAAACCAAAGGGTTTCCTTCAATAACTTGTTCCTTTTTCATGATCGCAGTTCCGAAACGAGGTCGTTTCTCCGCGGATTCGACGGGAACTCGCTCCGAGCGTCTGCGGCGGCGGTGTTTGAGGATGAGAACGGAGTTTCGTCGCCGAATAGCACTGTGTCGAGTGTAAGTGGAAAACGGAGTGAAAGAGAAGGGAATGGAGATGAAAATGATGCTGTTGAGAGGGCTTCGTGTTCTCGCGGTGGAAGCGAGGATGATGACGGTGGAGGATGCGGCGGCGATGGTGAGTCTTCGAGGAAGAAGCTGAGATTGTCGAAGGAACAGTCGTTGTTGCTGGAAGAAACTTTCAAAGAGCACAATACGCTGAATCCGAAACAAAAGCAAGCATTGGCGAAACAGTTGAATCTGAAGCCCAGACAAGTGGAGGTGTGGTTTCAAAACCGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATATTTGAAGAGATGCTGTGAGACTCTAACTGAAGAGAATAGAAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTTTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCGTGCGAACGTGTCGCCGTGTCATCCGCATCCTCTTCGTCAGCAGCCGCACCCTCTGCTTCAACTCCAGCTAACCGCAATTCGTTGGTCCCGAGTGTTCAACGACCAGTGCCTGTCAACCCTTGGGCGGCCATGTCTCTCCAAAATCGTTCCCGGTCATGA 909 0.4829 MADKDDEFCLGLSLSLGCGDYEKEKIINQTPINVIQLQKPLPNQRVSFNNLFLFHDRSSETRSFLRGFDGNSLRASAAAVFEDENGVSSPNSTVSSVSGKRSEREGNGDENDAVERASCSRGGSEDDDGGGCGGDGESSRKKLRLSKEQSLLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAPSASTPANRNSLVPSVQRPVPVNPWAAMSLQNRSRS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00056 302 Coils Coil 202 232 - -
Vifa4g00056 302 MobiDBLite consensus disorder prediction 85 101 - -
Vifa4g00056 302 MobiDBLite consensus disorder prediction 259 283 - -
Vifa4g00056 302 SMART HOX_1 138 200 IPR001356 GO:0003677
Vifa4g00056 302 Pfam Homeodomain 140 194 IPR001356 GO:0003677
Vifa4g00056 302 MobiDBLite consensus disorder prediction 84 144 - -
Vifa4g00056 302 FunFam Homeobox-leucine zipper protein 18 124 201 - -
Vifa4g00056 302 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
Vifa4g00056 302 MobiDBLite consensus disorder prediction 102 123 - -
Vifa4g00056 302 MobiDBLite consensus disorder prediction 259 284 - -
Vifa4g00056 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 272 - -
Vifa4g00056 302 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vifa4g00056 302 Pfam Homeobox associated leucine zipper 196 230 IPR003106 GO:0006355|GO:0043565
Vifa4g00056 302 SUPERFAMILY Homeodomain-like 126 197 IPR009057 -
Vifa4g00056 302 CDD homeodomain 140 197 IPR001356 GO:0003677
Vifa4g00056 302 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
Vifa4g00056 302 SMART halz 196 239 IPR003106 GO:0006355|GO:0043565
Vifa4g00056 302 Pfam HD-ZIP protein N terminus 1 105 IPR006712 GO:0005634
Vifa4g00056 302 Gene3D - 132 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00056 Vifa-Chr4 7103162 7105003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00056 47 299 Homeobox Transcription Factor Family AT3G60390 64.528 1.35e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa4g00056 HD-ZIP_N 5.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00056 K09338 - gmx:100798480 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00056 4 7103162 7105003 Vifa4g00056 4 7103162 7105003 ECH