Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00054 ATGAGAGTGATGTTGTTAACCCTTTCACGCCATTTCTGCACCACCAGCAACAACATAACATCAACCTTAAAATCCTCAAAAACCAAATTCCCTTGTCGGTACAAGAAAGCCACTCTGTCACAAGCTCAACAGTCACTCACTGATTACCTCCACGCCACAAGGTCCATTCCTTACGCCTTCGCTGATCAAATATCCAAAAACTCCATTCATTCCCTCTCCAATCTCATTTCAAAGTTGGGTTCTTTTTCATCTTCTGATTTCCCCAAGAAGCTTGATAGGTTCTTAAGGTACAACCCAATTAATGAATTTGAGTTTTTCTTTGAAAGCATTGGAATTCAGTATGCTCAAATTTCTCATTTGTTGCCTCATGATAAGTTCTTCTTTTCTGAAGATGGGTCACTTCTTGATTCTGCTTGTGTACTTTATGAATTTGGGTTTCCTTGGGATAAGCTTGGGGTGATTTATGTGGAGAGTGGTTTTTTGTTTAGGATGAGTGGTTCTGAGTTAAAGGGTAGGCTTTGTTGGTTTCAAAGATATACTTTTTGTAATGTGCAAATTGTTGGGATATGTTTGGCTTTTCCTTATGTTTTTGGTGCGGAGGAAGGGAAATTGGTTGATGAGATTGATGGGTTGCTTTCGGAGTTGAAGTTGGTGTTTTTGGATTTTGATTTGGGAGGTTCTGTTGAAGGGAATGTGGATGTTTGGCATGAGGTTTGTAGGAAAATAAAAGTGTTTTATGATTTGAATGATGGTAAAGGGAAGATAGGTGAACTCATTGGAAGGAATAAACATGTCATTCTTGAACATAGAGAAGAGGATTTGATTGAAAAAGTTGAGTATTTTTGTAGGTTTGGTGTTGAGAAGGAGGAAGTATCTCGGTTGATTCTACAAGGTTCAGAGTTGTTGAATCTTGATTTTGAAAAGCCGGTGATTAATGTGTTGAAACTGTTGAAACATATTGGAATGAGCTCCAAAGGTGTTAGTGATGTCAGGAAGAATTACGCTCACGCGTTGGGAACAATAAAAATGGAGAATCTTCCCAATGTGATGAGGGCTATGGGTTTACAAGAATGGTTTTTCGATAGAATCAAGGATGGGAATCATATGCTTTTGGTGAATTTTATCGAAAGTTATCCCAATGAAGAACATGATAAAGTTTATCAGGGTTGTTTGAAGACAATTCGTAACGCAAGAACACCAACTCATAATATGAGTAAATTAAATTTCATGCATACTAAAGGATTTGGTGAAAATGCAATGACCATGGATATCTTAACTCACATGCATGGAACAAGTGAAGAGTTACACAAAAGATTTGATTGTCTTCTACATTTAGGGATTGAATTCTCAAAGCTGTGTAAGATAATCACAAAGCAACCAAAGGTTCTAAGCCAAAATCCCGAAACCCTAGAGAAAAAGATTAATTTTTTGCGTCAGGAGATGGGAAAGTCCTTAGAGCTTTTGGACACTTTTCCAGCATTTATATGTTTTGACTTAGAGAACCGAATTAAGCCGAGGTTTAGATTCTATATGTGGGTTTTGGAAAAGGGATTGTCTTCCAAAAAGTATTCCATTGCAAGCATGATTGCGACCAGTGACAAGAATTTTGTTGGCCGTGCTTTTAAAATTCACCCGGCCGCCCCAAAACATTGGTTTGAGCAATTCTATCCCAAGAAATTTTGA 1683 0.3767 MRVMLLTLSRHFCTTSNNITSTLKSSKTKFPCRYKKATLSQAQQSLTDYLHATRSIPYAFADQISKNSIHSLSNLISKLGSFSSSDFPKKLDRFLRYNPINEFEFFFESIGIQYAQISHLLPHDKFFFSEDGSLLDSACVLYEFGFPWDKLGVIYVESGFLFRMSGSELKGRLCWFQRYTFCNVQIVGICLAFPYVFGAEEGKLVDEIDGLLSELKLVFLDFDLGGSVEGNVDVWHEVCRKIKVFYDLNDGKGKIGELIGRNKHVILEHREEDLIEKVEYFCRFGVEKEEVSRLILQGSELLNLDFEKPVINVLKLLKHIGMSSKGVSDVRKNYAHALGTIKMENLPNVMRAMGLQEWFFDRIKDGNHMLLVNFIESYPNEEHDKVYQGCLKTIRNARTPTHNMSKLNFMHTKGFGENAMTMDILTHMHGTSEELHKRFDCLLHLGIEFSKLCKIITKQPKVLSQNPETLEKKINFLRQEMGKSLELLDTFPAFICFDLENRIKPRFRFYMWVLEKGLSSKKYSIASMIATSDKNFVGRAFKIHPAAPKHWFEQFYPKKF 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00054 560 SMART mt_12 485 517 IPR003690 GO:0003690|GO:0006355
Vifa4g00054 560 SMART mt_12 292 323 IPR003690 GO:0003690|GO:0006355
Vifa4g00054 560 SMART mt_12 256 287 IPR003690 GO:0003690|GO:0006355
Vifa4g00054 560 SMART mt_12 187 218 IPR003690 GO:0003690|GO:0006355
Vifa4g00054 560 SMART mt_12 453 484 IPR003690 GO:0003690|GO:0006355
Vifa4g00054 560 Gene3D Transcription termination factor 3, mitochondrial 67 221 IPR038538 -
Vifa4g00054 560 Gene3D Transcription termination factor 3, mitochondrial 231 555 IPR038538 -
Vifa4g00054 560 FunFam Transcription termination factor MTEF18, mitochondrial 391 551 - -
Vifa4g00054 560 Pfam mTERF 239 339 IPR003690 GO:0003690|GO:0006355
Vifa4g00054 560 Pfam mTERF 432 536 IPR003690 GO:0003690|GO:0006355
Vifa4g00054 560 PANTHER CGI-12 PROTEIN-RELATED 42 542 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00054 Vifa-Chr4 6477568 6479250 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa4g00054 mTERF 3.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00054 - - gmx:100812245 723.391