Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00046 ATGCATGGGAAAAAAGAGCAAGAACATGTGAAGAAAGGTCCATGGAAAACAGAAGAAGATGATGTTTTACTTCATCATGTTAAGACATATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTTAATAAGCTTCGACCAAACCTCAAAAATGGATGCAAGTTTGCAATAGAAGAAGAGAGGATTGTGATAGAGTTGCAGGAACAATTTGGGAACAAATGGGCTAAGATTGCATCCTACTTGCCCGGAAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGTAGACAGAAGAGGTTGGCTAGGCTTCTCAAAACATCATCATCAACATCAACCTCAAAGTCACACAAAAACAAAGCCAAAGTTTCTTCCCATGTTCCAACTTTAGAGGTTCCTTGTAAGTTCAGTTCTTCATCAGAGGGAGAAACATCATCAAAGCCTAACTCGTGTTCATTACCCTGCATTGAAAAATCTGCTGAGGTTATCAAAATGGTGCCACTACAAGATCTTATAACATCAGAAAAGTCAAGTATCAACGCAAACTATGTCGAACAAGACTTAACCCATTTTGATCAGAGCTACAAAAGTACTAAACACATTGCATTTCCTCAGATTCCAGAACTCCAAACTGATCTTACTTTTCCAATGGAAAGAGTTGATGAACAGAATATATTTGATGTTTTCGATCCTTTGTATTCATCTGAGTTTGGAATGGTTCCTTTCTTCGAGTCATCAGGGGGTTGCAGAATCGGGAATATGGATACAAATGACGATTTCTCTACAAACATTGATAGTTTTTTTGATGATTTTCCTGAAGACATGTTTGATCACATTGATCCTCCTGCAAATCCATCTAATCTCTGA 906 0.3852 MHGKKEQEHVKKGPWKTEEDDVLLHHVKTYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFAIEEERIVIELQEQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLKTSSSTSTSKSHKNKAKVSSHVPTLEVPCKFSSSSEGETSSKPNSCSLPCIEKSAEVIKMVPLQDLITSEKSSINANYVEQDLTHFDQSYKSTKHIAFPQIPELQTDLTFPMERVDEQNIFDVFDPLYSSEFGMVPFFESSGGCRIGNMDTNDDFSTNIDSFFDDFPEDMFDHIDPPANPSNL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00046 301 PANTHER TRANSCRIPTION FACTOR DUO1 4 300 - -
Vifa4g00046 301 FunFam MYB transcription factor 12 64 - -
Vifa4g00046 301 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Vifa4g00046 301 CDD SANT 72 107 IPR001005 -
Vifa4g00046 301 Pfam Myb-like DNA-binding domain 72 107 IPR001005 -
Vifa4g00046 301 MobiDBLite consensus disorder prediction 118 139 - -
Vifa4g00046 301 Pfam Myb-like DNA-binding domain 15 65 - -
Vifa4g00046 301 Gene3D - 67 140 - -
Vifa4g00046 301 Gene3D - 3 65 - -
Vifa4g00046 301 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Vifa4g00046 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Vifa4g00046 301 CDD SANT 14 59 IPR001005 -
Vifa4g00046 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
Vifa4g00046 301 FunFam Transcription factor GAMYB 67 138 - -
Vifa4g00046 301 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vifa4g00046 301 SMART sant 11 61 IPR001005 -
Vifa4g00046 301 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00046 Vifa-Chr4 6252039 6253915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00046 1 298 MYB Transcription Factor Family AT3G60460 49.346 2.07e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g00046 Myb_DNA-bind_6 5.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00046 K09422 - gmx:100818656 372.859