Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00038 ATGTTTGGGCGTGGACCAACAAGGAAGAGTGATAACACCAAATATTATGACATTCTTGGTGTTTCAAAAAGTGCCAGTGAGATGAAGATCAAGAAAGCCTATAGAAAGGCGGCGATGAAGAATCATCCCGATAAGGGTGGAGATCCTGAGAAGTTCAAGGAATTGGGCCAAGCATATGAAGTGTTAAGTGATCCTGAAAAGAAAGAACTCTATGATCAATATGGTGAAGATGCCTTGAAAGAAGGAATGGGAGGAGGAGGAAGTTCGTTTCATAATCCATTTGATTTATTCGAATCATTTTTTGGTGGAGCTGGCTTTGGCGGTGGTCCTTCACGGGGAAGAAGACAGAAGCAAGGAGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGATGTGTTTAATGGCACTACAAAGAAACTATCTCTTTCTAGGAATGTGTTGTGCGTAAAATGTAAAGGGAAGGGTTCAAAAAGTGGCACAGCTGGGAAGGTGTTTTGGATGCCAGGGGCACTGGTATGA 522 0.4272 MFGRGPTRKSDNTKYYDILGVSKSASEMKIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGSSFHNPFDLFESFFGGAGFGGGPSRGRRQKQGEDVVHSLKVSLEDVFNGTTKKLSLSRNVLCVKCKGKGSKSGTAGKVFWMPGALV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00038 173 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Vifa4g00038 173 Pfam DnaJ domain 14 72 IPR001623 -
Vifa4g00038 173 Gene3D - 113 165 - -
Vifa4g00038 173 Gene3D DnaJ domain 11 112 IPR036869 -
Vifa4g00038 173 FunFam dnaJ protein homolog 11 111 - -
Vifa4g00038 173 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 156 IPR008971 GO:0006457|GO:0051082
Vifa4g00038 173 SMART dnaj_3 13 67 IPR001623 -
Vifa4g00038 173 CDD DnaJ 15 64 IPR001623 -
Vifa4g00038 173 PRINTS DnaJ domain signature 47 67 IPR001623 -
Vifa4g00038 173 PRINTS DnaJ domain signature 16 34 IPR001623 -
Vifa4g00038 173 PRINTS DnaJ domain signature 67 86 IPR001623 -
Vifa4g00038 173 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Vifa4g00038 173 SUPERFAMILY Chaperone J-domain 10 109 IPR036869 -
Vifa4g00038 173 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 161 IPR044713 GO:0006457|GO:0030544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00038 Vifa-Chr4 6014135 6015934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00038 5 79 C2H2 Transcription Factor Family AT1G74250 36.905 7.33e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00038 K09503 - gmx:100800590 266.929