Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00036 ATGGAAAAACATCTCAATATAGAAAGTGACGATGCTGAAGACAACTTTGCGACATCTTCAACACTAACAACAACATCATCATCAACTTCAAATAAGAGGAAGAGAATTGAAAGTGATGATAATAACAATATCAAACATCCAAGTTATAGAGGAGTAAGGAAGAGGAATTGGGGAAAATTTGTGTGTGAGATTCGTGAGCCAAAGAAAAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTGGCTATAAAGGGTCATTCAGCATATCTTAATTTCCCTCAATTAGCAAAAGCACTTCCAAGGCCAATTAGCACTTCTCCAAAAGATATTCAAGAAGCAGCTGCAAAAGCAGCTAATAACACTTCATTTGATGAAGCTCAAGTTGAAGCAAGACAAGAAGAAGAACATGCCTCACCTTCTTCAATTCTTGAATCATCATCAAGTTCGACATTTAACGATGATGATGATGCTTCATTGTTTGATTTGCCAGATCTTTTTCCTCATGATGATGGAAAGAATGGACTTTGCTCTTATTCTTTGAAAAATTCTATTTCGTATCTATGTGCCGTTGAATCAACTGCACACAGATGCAATGTAGAATTTCTTGAAGATCTGTCATTTTGGGAAAAATATTTGTAA 675 0.3615 MEKHLNIESDDAEDNFATSSTLTTTSSSTSNKRKRIESDDNNNIKHPSYRGVRKRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPQLAKALPRPISTSPKDIQEAAAKAANNTSFDEAQVEARQEEEHASPSSILESSSSSTFNDDDDASLFDLPDLFPHDDGKNGLCSYSLKNSISYLCAVESTAHRCNVEFLEDLSFWEKYL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00036 224 MobiDBLite consensus disorder prediction 1 49 - -
Vifa4g00036 224 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Vifa4g00036 224 MobiDBLite consensus disorder prediction 32 47 - -
Vifa4g00036 224 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Vifa4g00036 224 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Vifa4g00036 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 180 - -
Vifa4g00036 224 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Vifa4g00036 224 Pfam AP2 domain 47 98 IPR001471 GO:0003700|GO:0006355
Vifa4g00036 224 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Vifa4g00036 224 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Vifa4g00036 224 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Vifa4g00036 224 MobiDBLite consensus disorder prediction 12 31 - -
Vifa4g00036 224 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Vifa4g00036 224 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00036 Vifa-Chr4 5986841 5987515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00036 32 204 AP2-EREBP Transcription Factor Family AT2G44940 46.569 2.69e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g00036 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00036 - - gmx:100801129 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00036 4 5986841 5987515 Vifa4g00036 4 5986841 5987515 ECH