Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00029 ATGTTGGACTATGAATGGGGTAACCCATCTAACATCATGCTTACAGGAAATGAAGATAACTCCGCCGCAGCTTCCGATCAAACCCACCGTCAAATCTTCGACCACTATGCTTCTCAAGCTATGCTATCTGAGAATTACTTAAACGGGTCTGGGCATGGGCTTGCCATCAACATGAACAACTGTGATTTCAACCACCTACAGCAGCAGCAACAACAACAACACTTTAGCCCACAAGCCCAACATCATCATATGCATCACTCTTTCTTCGACCCACGGGCTTTTCAGGGTGGTTCTTCAACAAACTCATACCCTCCACCTCAACCATCACAGCATCCGTTGCTTTCTCTAGACCCACTTCCTCAAAACTGTGGGCATGGACATGGGCCTGGACTCCTTGTCCCGAAATCAGAGGATATTAACAGGCCCATGGACTTTGTCGGCTCTAGGATTGGGCTTAACCTTGGTGGCCGTACTTACTTCTCCTCTTCCGAAGATGACTTCGTGAGCCGACTCTACCGCCGGTCTAGACAGCCTGAACCGGGTTCACACGGGTCTTCCAACTCGCCTAGGTGTCAGGCCGAAGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGCCGACATAAGGTTTGCGAGTTTCACTCCAAGGCAGCCACCGTCATCGCCGCTGGGTTAACTCAGCGATTCTGCCAGCAATGCAGCAGGTTTCATCTTCTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGAAAGAGATTAGCTGATCATAATCGTCGCAGAAGAAAAACTCAACACCCAAATACTCAAGAAATTCACAAATCTCAAAACACTTTGGAAAATGCTGCTACAAGATCTCCGCCGGAGTCGGGAACTCAGTCTTCATCATCGGTGACGGTGGCGGTTTCTCCGCCGGATTATTTTCGACAAAGGTCGTATCAAAGCCCAAGCCCATCAACAATATCAAGCTCAATGTTTTTCTCAACTGGGTAG 996 0.4859 MLDYEWGNPSNIMLTGNEDNSAAASDQTHRQIFDHYASQAMLSENYLNGSGHGLAINMNNCDFNHLQQQQQQQHFSPQAQHHHMHHSFFDPRAFQGGSSTNSYPPPQPSQHPLLSLDPLPQNCGHGHGPGLLVPKSEDINRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRQPEPGSHGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQEIHKSQNTLENAATRSPPESGTQSSSSVTVAVSPPDYFRQRSYQSPSPSTISSSMFFSTG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00029 331 ProSiteProfiles Zinc finger SBP-type profile. 188 265 IPR004333 GO:0003677
Vifa4g00029 331 MobiDBLite consensus disorder prediction 89 136 - -
Vifa4g00029 331 Pfam SBP domain 191 264 IPR004333 GO:0003677
Vifa4g00029 331 MobiDBLite consensus disorder prediction 271 331 - -
Vifa4g00029 331 Gene3D - 181 252 IPR036893 GO:0003677|GO:0005634
Vifa4g00029 331 MobiDBLite consensus disorder prediction 254 268 - -
Vifa4g00029 331 MobiDBLite consensus disorder prediction 254 331 - -
Vifa4g00029 331 FunFam Squamosa promoter-binding-like protein 14 182 252 - -
Vifa4g00029 331 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 173 320 IPR044817 GO:0003677
Vifa4g00029 331 SUPERFAMILY SBT domain 189 268 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00029 Vifa-Chr4 3964956 3966674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00029 1 238 SBP-box Gene Family AT1G02065 47.200 5.53e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa4g00029 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00029 - - gmx:100802206 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00029 4 3964956 3966674 Vifa4g00029 4 3964956 3966674 ECH