Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00017 ATGGCTAAGCATAATATTTTTCTATTCTCTTTTGCATGTTTAGTTTTCTCTTCTATAACTCTTTTGAGTTGTGCTGCAACTCAAATTGGTAATGAATACATTGTATACATGGGGTCACTTCCTAAAGAAGTATCATATTCTCCAACCTCTCACCATTTGAATATGTTGCAACAAGTCTTTGAAGGTGGCAACATAGAAAATCTATTACTTAAAAGTTATAAGAGAAGTTTCAATGGTTTTGCTGCAATACTCAATGATCAACAAAGAGAAAAACTTCTCAGTATGAAAGAGGTGGTTTCAGTTTTTCCAAATCAAAACTTTCACATACAAACTACGGGATCATGGGACTTTCTTGGATTTCATCAAACAATCAAAAGAAATTCGATTATTGAGACTGATTTGATAATCGGAGTCATAGACAGTGGGATATGGCCAGAGTCTGAAAGTTTCAATGATAAAGGTCTTGGTCCCATTCCAAAGAAGTGGAAGGGAGTTTGTAAAGGTGGTTCTAACTTCACTTGCAATAATAAACTCATCGGAGCACGATTTTATGGTAATACGGATAGTGCGAGAGATGAGGCTGGTCATGGAACTCACGTAGCATCAACTGCAGGTGGAAGAGAGGTGCAGGGTGTGAGCTTTTTTGATCTTGGAAAAGGAACCGCAAGAGGTGGAGTCCCATCTTCAAGGATTGCTATGTACAAAATATGTGGTGCAGATGGTAGATGCAGTACCAGTGATATCTTAGCTGCATTTGATGATGTCATTGCTGATGGTGTTGACATCATCTCTCTCTCAATTGGGGGTCAAAGTGCAATAGATTTTGTGAATGACCCTATTGCTATTGGTTCTTTTCATGCCATGGAGAATGGAATACTCACATCAAATTCTGCGGGAAACGATGGTCCTGGCGCGAGTACTATAGTAAGTGTAGCTCCTTGGTTATTTAGTGTTGCAGCAACTACCATAGATCGTAAATTCATTAGTAAGCTCATTCTTGGAAATGGAAAGACTCTCATTGGTAGTTCAGTTAATGCTTTCCCCTCAAATGGCACAAAAATTCCAATAGCTGAGGGTACTTGCTCAAGTGGCTTAGATAAAACATTGGTAGAAGGTAAGATTGTTTTGTGTGAATCAGGAAAAAATGATGAACCCGCTTTTCAAAGTGGTGCATATGGTATTGTCTCAAGTGTTAAAGATTCTCAAATTGACGTGGCTTTTGTCTCAGCGTTTCCTTCAACTAACTTGAATTCAAAAGACTTCGATCTTGTTCAATTTTATGCAAAATCCACTAGATCCCCTGAAGCTGAAATTTTGAAAAGTGAGATCTTACGTGACACAAATGCTCCTAGAGTTGCTTTTTTCTCTTCTCGTGGTCCAAATTCAGTGGTTCTAGATATTATGAAACCAGATATAAGTGCCCCAGGTGTGAGTATCTTGGCTGCATTTTCACCTCTAGCCCCGCCTTCTTTTCGTATCACTGACACGAGAAAAGTTAGATATAACATAGTGTCCGGAACCTCCATGTCGTGTCCCCACATTTCTGGAATCGCTGCATATGTGAAATCATTTCATCCAGATTGGTCACCCGCGGCTATAAAGTCCGCTATCATGACCACAGCAAATCCTGTAAATGGTACTTATAATGATTTGGCTGGGGAGTTTTCTTATGGATCAGGGAATGCCAATCCGCTACTAGCTGTTAACCCGGGACTTATTTATAACATCACTAAAGACGATTATGTGCAAATGCTTTGCAATTATGGTTACGATGATGAAAAAATTAAACAAATTAGTGGAGAAGCCTCAAGTTGTCGTGGAACTTCTGATCCATCTTTAGTAAAAGATCTAAATTATCCTGCACTAGTCATTCCTGTTGCACCTCAGAGATCTTTCAATATCAAGTTTCCTAGAACGGTTACAAATGTTGGATCTCCCACTTCAACCTACAAGGCTATTGTCACTCCAATTCCAAATGTCAAGATTACAGTGGAGCCAAATCTTCTCTCATTCAAATCAGTACAAGAGACAAAGTCATTTGTTGTCACAGTTGTTGGGAGTGTAGGATCAGGTCAAACCGTGTTTTCATCATCACTTGTTTGGTCAGATGGAACCCACAATGTCAAGAGTCCAATCATCATACAATTAACATCTTAA 2157 0.3904 MAKHNIFLFSFACLVFSSITLLSCAATQIGNEYIVYMGSLPKEVSYSPTSHHLNMLQQVFEGGNIENLLLKSYKRSFNGFAAILNDQQREKLLSMKEVVSVFPNQNFHIQTTGSWDFLGFHQTIKRNSIIETDLIIGVIDSGIWPESESFNDKGLGPIPKKWKGVCKGGSNFTCNNKLIGARFYGNTDSARDEAGHGTHVASTAGGREVQGVSFFDLGKGTARGGVPSSRIAMYKICGADGRCSTSDILAAFDDVIADGVDIISLSIGGQSAIDFVNDPIAIGSFHAMENGILTSNSAGNDGPGASTIVSVAPWLFSVAATTIDRKFISKLILGNGKTLIGSSVNAFPSNGTKIPIAEGTCSSGLDKTLVEGKIVLCESGKNDEPAFQSGAYGIVSSVKDSQIDVAFVSAFPSTNLNSKDFDLVQFYAKSTRSPEAEILKSEILRDTNAPRVAFFSSRGPNSVVLDIMKPDISAPGVSILAAFSPLAPPSFRITDTRKVRYNIVSGTSMSCPHISGIAAYVKSFHPDWSPAAIKSAIMTTANPVNGTYNDLAGEFSYGSGNANPLLAVNPGLIYNITKDDYVQMLCNYGYDDEKIKQISGEASSCRGTSDPSLVKDLNYPALVIPVAPQRSFNIKFPRTVTNVGSPTSTYKAIVTPIPNVKITVEPNLLSFKSVQETKSFVVTVVGSVGSGQTVFSSSLVWSDGTHNVKSPIIIQLTS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00017 718 CDD PA_subtilisin_like 331 438 - -
Vifa4g00017 718 FunFam Subtilisin-like protease SBT1.5 133 333 - -
Vifa4g00017 718 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vifa4g00017 718 PRINTS Subtilisin serine protease family (S8) signature 131 150 IPR015500 -
Vifa4g00017 718 PRINTS Subtilisin serine protease family (S8) signature 505 521 IPR015500 -
Vifa4g00017 718 PRINTS Subtilisin serine protease family (S8) signature 192 205 IPR015500 -
Vifa4g00017 718 Pfam Peptidase inhibitor I9 33 109 IPR010259 -
Vifa4g00017 718 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 109 IPR037045 -
Vifa4g00017 718 Gene3D - 585 717 - -
Vifa4g00017 718 SUPERFAMILY Subtilisin-like 131 575 IPR036852 GO:0004252|GO:0006508
Vifa4g00017 718 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 713 IPR045051 -
Vifa4g00017 718 CDD Peptidases_S8_3 107 542 IPR034197 -
Vifa4g00017 718 ProSiteProfiles Serine proteases, subtilase domain profile. 114 572 - -
Vifa4g00017 718 Gene3D Peptidase S8/S53 domain 133 581 IPR036852 GO:0004252|GO:0006508
Vifa4g00017 718 Pfam Fibronectin type-III domain 616 714 IPR041469 -
Vifa4g00017 718 ProSitePatterns Serine proteases, subtilase family, histidine active site. 196 206 IPR022398 -
Vifa4g00017 718 Pfam Subtilase family 133 558 IPR000209 GO:0006508|GO:0008236
Vifa4g00017 718 ProSitePatterns Serine proteases, subtilase family, serine active site. 506 516 IPR023828 -
Vifa4g00017 718 Gene3D - 324 445 - -
Vifa4g00017 718 FunFam Subtilisin-like protease SBT1.5 585 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00017 Vifa-Chr4 1668391 1670760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00017 28 717 Subtilisin-like Serine Gene Family AT3G46840 53.212 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00017 - - psat:127076787 1058.51