Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00016 ATGGCTTCTTTGCTTCATCCAACTTCAACTGCAATCTGTTTCTTCCATCCCTTCAAACCCACCCTTTCACCAAACAACTTTTCTTTCTTAACTAACACTAACACTAATCGTTTCAACACTAACTCTAGTACAAAGTGTAATGCATTTTTGGACAATGTTGTTGATGTCCACCACTTTCCTTCTATCGTCCAATCAGGAATACTCGAGTTTCAAGAATTACCAGATATGCAAAGATGGGAGTTTCTTGTGTTTGGTGGCCTTATATGGATTTACTTAACTTCAAGACCTGGTGTTCTTATTGGTGCCATTGATGCTTACCTTCTCGCCCCTCTTCAACTTGGTTTGGATAATCTATCTGGAAAGAGAAACTTGAAGACACGTGATTTTCTTGTTGGAGATAAAATTGGTGAAGGGTCTTTTGGTGTTGTTTATTCTGGTCTTTTGGTCCCAAAGAATGTGCTTGATGGAGACTTGAACAACAAGGGAAGATCCAAGGCAGCACTGTTAGATCCCAGATCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGAAATTCGAGGGGCTGAGGAATTTGGTGAATTTGAGGAATGGTTTAATTACAGGCTATCTCGAGCAGCACCTGAAACATGTGCTGAGTTTCTCGGAAGTTTTGTAGCTGATAAAACTAACTCAAAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCTTACACTTGCTGATTACATCAAGGGGCGTAGCTTCCCTTCAAACTTAGAATCTCTCATGTTTGGACGTGTCTTGGAAGGCATTGTTCATAGAGATATAAAGCCAGCCAACTTAGTGGTCACTAAACGGGGGCAGATTAAACTTATTGATTTTGGTGCAGCAACAGACCTTCGGATTGGAAAGAATTATGTTCCTGACCGCACCCTTTTGGATCCCGATTATTGTCCACCAGAACTATATGTACTCCCAGAAGAAACACCAAGTCCTCCACCAGCGCCAATTGCCGCTTTCTTTTCACCAATCCTATGGCAGTTAAACAGCCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTTCTGCAAATGGCAATACCAACTTTAAGGTCACCTGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAAACTGTGGTTATGATTTGAAAAAATGGAGGGAGTATACTCGCCTGAGGCCCGACTTCCAAATTCTTGATAGTGAATCTGGTAGAGGTTGGGACTTAGCAACAAAGCTTATCTCTGAGAGAGGTCTCTTGAGAAGAGGACGTTTATCTGCTGCTTCAGCTTTGAGACATCCTTATTTTCTTCTGGGAGGTGATCAGGCAGCTGCCGTTCTTTCAAAATTAAGCCTAAGTAGAAAGTGA 1386 0.4091 MASLLHPTSTAICFFHPFKPTLSPNNFSFLTNTNTNRFNTNSSTKCNAFLDNVVDVHHFPSIVQSGILEFQELPDMQRWEFLVFGGLIWIYLTSRPGVLIGAIDAYLLAPLQLGLDNLSGKRNLKTRDFLVGDKIGEGSFGVVYSGLLVPKNVLDGDLNNKGRSKAALLDPRSKDKVILKKVKVEIRGAEEFGEFEEWFNYRLSRAAPETCAEFLGSFVADKTNSKFTKGGKWLVWKFEGDLTLADYIKGRSFPSNLESLMFGRVLEGIVHRDIKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPDRTLLDPDYCPPELYVLPEETPSPPPAPIAAFFSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIKNCGYDLKKWREYTRLRPDFQILDSESGRGWDLATKLISERGLLRRGRLSAASALRHPYFLLGGDQAAAVLSKLSLSRK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00016 461 Gene3D Phosphorylase Kinase; domain 1 114 238 - -
Vifa4g00016 461 Gene3D Transferase(Phosphotransferase) domain 1 264 444 - -
Vifa4g00016 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 269 281 IPR008271 GO:0004672|GO:0006468
Vifa4g00016 461 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 268 461 - -
Vifa4g00016 461 Pfam Protein kinase domain 267 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00016 461 SUPERFAMILY Protein kinase-like (PK-like) 125 443 IPR011009 -
Vifa4g00016 461 ProSiteProfiles Protein kinase domain profile. 129 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00016 461 SMART serkin_6 129 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00016 Vifa-Chr4 1306647 1308535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00016 129 298 MAP Kinase Kinase Kinase AT3G13530 30.939 2.08e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vifa4g00016 Pkinase 1.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00016 - - psat:127120955 778.089