Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00015 ATGAACTCTTTGAGTTCTGAGAGCTTGGGCTTCAGTTTGAGGTTTGGCTTATGCTTTTTTATGTTTAAGGCTATGGCTTCATGTTTGGTTCAAGGCTTATGCAGGTTGGGTTTGAAGCAGGTTTATGTTACAGTAGGCTTTAGGCTTGACAGGTTGAAAGGCTTGGACAGATTTGAGGCAGGTTCATGGCTTTTTGTTTGTTTAAGCTTGACACAGGTAAGGCTTGCTGTTTGTTTGAAGCAGGGTGGAGGCAGTTTTGAGACTTGCTTCAGTTTTTGTGTTACAAGTTTGACAGGTGAATTAAGAAAGTTCGGCATTGTGCATCAAATTGAGAATGTTGGTTCACACTTTAAGGAAGTTGTCATGTTTATGTGGCCCTTTGAACTGAACAAGCCAGCAGATGGATTGAAAAACCGATTCAAGGATGGTGGAGATTCTGGCGACTGTGAGGATCTCATCAACGAACTCATCAATAAAATGAATTAA 486 0.4095 MNSLSSESLGFSLRFGLCFFMFKAMASCLVQGLCRLGLKQVYVTVGFRLDRLKGLDRFEAGSWLFVCLSLTQVRLAVCLKQGGGSFETCFSFCVTSLTGELRKFGIVHQIENVGSHFKEVVMFMWPFELNKPADGLKNRFKDGGDSGDCEDLINELINKMN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00015 161 PANTHER 60S RIBOSOMAL PROTEIN L7 106 161 IPR039699 -
Vifa4g00015 161 SUPERFAMILY Ribosomal protein L30p/L7e 105 161 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00015 Vifa-Chr4 1290511 1292770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00015 106 161 Cytoplasmic Ribosomal Protein Gene Family AT2G44120 49.153 1.00e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00015 K02937 - gmx:100500005 93.9745