Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05231 ATGGGACACTGCTTCTCCAAACCACACGACAACAGAGTACCCATCTCCTATGACTATGGTAATCCACAATTCCCACACAGAAACCAACCTCAACCTCATCATCCTCGCTATCCATATCATAATACTGGTGCAAAATCAGCTCCATCTCCGTCTTCTGCTTCATCATCGCATGCAAATAGTGAGCATCAACCAATATTAGGAAGATCATACATTGACATGAAGACACTATATAGTATAGGAAAGGAACTAGGAAGGGGTCAATTTGGTGTCACTTATTTTTGTACTGAAAAGGCCACGGGTAGAAACTATGCTTGTAAGTCGATTTCGAGACGAAAGTTAACAAGAAAGAAGGAAATTGAGGATGTTAAGAGGGAAATTATGATCCTTCAGCACTTAACTGGTCAACCAAACATTGTTGAGTTTAAGGGTGCTTATGAGGATAGACAGAGTGTGCATTTGGTGATGGAGTTGTGTTTGGGCGGCGAGCTTTTCGATCGGATCACTTTAAAGGGTAGTTATTCAGAGCGTGAAGCTGCTTCTATATTCAAACAAATTATGAATGTGGTTCATGCTTGTCATTTTATGGGGGTCATGCATAGGGATCTTAAGCCTGAGAATTTCTTGCTTGCTAGTAAGGATCCTAAGGCACCATTGAAAGCCACTGATTTTGGATCATCTGTTTTCATTGAAGAAGGTAAAGTATATAGAGAGCTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAAAAGGAATTATGGAAAGGAGATTGATGTGTGGAGTGCAGGAATCATTTTATACATCCTCCTATGTGGGGTGCCTCCATTTTGGGCTGAAACCGAAAAGGGCATATTTCAAGCTATTTTGGAAGGTAAGCTTGATCTGGAAAGTGCACCATGGCCTTCTATTTCAGCTTCTGCAAAAGATTTGATCAGGAAAATGCTGAGTTATGACCCTAAGAAACGCATTACAGCTTCTGATGCCCTTGAACACCCATGGATGAAAGAAGGTGGTGAGGCATCAGACAGGCCCTTAGATAATGCCGTTTTAATCAGGATGAAACAGTTCCGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTGCAGAAGAAGAAATCAAGGGCTTGAAACAAATGTTCAACAATATAGATACGGATCGAAGTGGCACAATCACATATGAAGAACTAAAATCTGGACTGTCCAAATTGGGATCCAAGCTTAGTGAATATGAAATGAAGCAACTAATGGAGGCTGCTGATGTTGACCAGAATGGAACTATTGACTATCATGAATTCATTACTGCCACTATAAACCGGCATAAACTTGAGAGGGAAGAGAATTTGTTCAAGGCTTTTCAATACTTTGACAAGGATAACAGCGGTTATGTAACAAGAGAGGAACTTAGACAAGCTCTGGCTGAACATCAAATGGGAGATGAAGCGACCATAGATGAAGTCATAGATGATGTAGACACTGACAATGATGGACGAATTAATTATCAAGAGTTTGTAGCTATGATGAAAAAGGGCACCTTGGATCATGATGAGAGAGAGAAACCATGA 1584 0.4047 MGHCFSKPHDNRVPISYDYGNPQFPHRNQPQPHHPRYPYHNTGAKSAPSPSSASSSHANSEHQPILGRSYIDMKTLYSIGKELGRGQFGVTYFCTEKATGRNYACKSISRRKLTRKKEIEDVKREIMILQHLTGQPNIVEFKGAYEDRQSVHLVMELCLGGELFDRITLKGSYSEREAASIFKQIMNVVHACHFMGVMHRDLKPENFLLASKDPKAPLKATDFGSSVFIEEGKVYRELVGSAYYVAPEVLKRNYGKEIDVWSAGIILYILLCGVPPFWAETEKGIFQAILEGKLDLESAPWPSISASAKDLIRKMLSYDPKKRITASDALEHPWMKEGGEASDRPLDNAVLIRMKQFRAMNKMKKLALKVIAENLAEEEIKGLKQMFNNIDTDRSGTITYEELKSGLSKLGSKLSEYEMKQLMEAADVDQNGTIDYHEFITATINRHKLEREENLFKAFQYFDKDNSGYVTREELRQALAEHQMGDEATIDEVIDDVDTDNDGRINYQEFVAMMKKGTLDHDEREKP 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05231 527 Gene3D - 343 523 - -
Vifa3g05231 527 ProSiteProfiles EF-hand calcium-binding domain profile. 486 520 IPR002048 GO:0005509
Vifa3g05231 527 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Vifa3g05231 527 PANTHER SERINE/THREONINE-PROTEIN KINASE 68 510 - -
Vifa3g05231 527 ProSiteProfiles Protein kinase domain profile. 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05231 527 SUPERFAMILY Protein kinase-like (PK-like) 77 345 IPR011009 -
Vifa3g05231 527 SMART efh_1 382 410 IPR002048 GO:0005509
Vifa3g05231 527 SMART efh_1 489 517 IPR002048 GO:0005509
Vifa3g05231 527 SMART efh_1 418 446 IPR002048 GO:0005509
Vifa3g05231 527 SMART efh_1 454 482 IPR002048 GO:0005509
Vifa3g05231 527 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Vifa3g05231 527 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Vifa3g05231 527 FunFam Calcium-dependent protein kinase 1 79 162 - -
Vifa3g05231 527 Gene3D Transferase(Phosphotransferase) domain 1 163 342 - -
Vifa3g05231 527 MobiDBLite consensus disorder prediction 44 63 - -
Vifa3g05231 527 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Vifa3g05231 527 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Vifa3g05231 527 MobiDBLite consensus disorder prediction 1 64 - -
Vifa3g05231 527 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Vifa3g05231 527 FunFam Calcium-dependent protein kinase 1 343 518 - -
Vifa3g05231 527 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Vifa3g05231 527 Gene3D Phosphorylase Kinase; domain 1 79 162 - -
Vifa3g05231 527 SMART serkin_6 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05231 527 CDD STKc_CAMK 77 334 - -
Vifa3g05231 527 Pfam EF-hand domain pair 383 443 IPR002048 GO:0005509
Vifa3g05231 527 Pfam EF-hand domain pair 452 515 IPR002048 GO:0005509
Vifa3g05231 527 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Vifa3g05231 527 Pfam Protein kinase domain 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05231 527 FunFam calcium-dependent protein kinase 1 163 342 - -
Vifa3g05231 527 SUPERFAMILY EF-hand 375 515 IPR011992 -
Vifa3g05231 527 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05231 Vifa-Chr3 1527550227 1527553819 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05231 1 517 EF-hand Containing Proteins AT3G20410 65.485 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa3g05231 Pkinase 1.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05231 K13412 - gmx:100816157 744.191