Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05228 ATGTCTCTACAAGAAGGGTATAAGGTTTTGGATCCTCCATCATTTTATGTGCCCATTAGATCACCTGCAAGGAAACTTCTTGCTACTCCTACTCCGATGGGGACTTCACTATATCAAATTCCTGACGAGAATTCATTCATGTCGTTATGCTGGCTTCTCCTCCGCTCTCTCTGTTCATCCGCTGTGCCTCCCATTTCCACCAAGCTCAGTTTCAACTCTGATTGTTTTGTAGTTATATATCCACCTTACCTCGACAACCTTACTCTGTCACGGACTGAACTAGATCGCTACTTGGAAGCTTCACAGATTAGGGAAAGAGCTATTGAAAGGACTAATAATGTCGTGGGAACATACAATGATATGAGGCTCCGAGTATTTTCCAAATACCCTGAATTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTCGCCATTCTTTTCTCCCGCATGGTTCGGTTACCCTCAATGAATGGAAAGGTGGCCTTGGTTCCTTGGTCGGATATGTTGAATCATAATTGTGAGGTGGAGACGTTTTTGGATTATGATAGATCTTCGAAGGGAATTGTCTTTACGACAGGTCGTCCCTATCTACCAGGTGAACAAGTGTTTATTTCATATGGGAATAAATCAAATGGGGAGCTTCTGTTATCTTATGGATTTGTTCCAAAGGAGGGCACAAATCCAAGCGACTCGGTTGAGCTACCGTTGTCACTCAAGAAATCTGATGAGTCCTATAAGGAGAAGTTAGAACTGTTGAGGAAGTATGGATTATCAGGATCTCAGTGCTTTCCATTAAGGGTCACTGGTTGGCCATTGGAGTTAGTGGCTTATGCTTATTTAGTTGACTTGAGATATCCTGAAATAGAGGAGCAGGCATTGCAGTTCATACTTGATAGTTGTGAATCTAGTATTTCAAAATACAATAAGCTCTTACAGGCAAGTGGATCGCTGGATTTGGACGTGACTTCTCCGAAACAACTTATCTTTAATTATATTGTATAA 1014 0.4172 MSLQEGYKVLDPPSFYVPIRSPARKLLATPTPMGTSLYQIPDENSFMSLCWLLLRSLCSSAVPPISTKLSFNSDCFVVIYPPYLDNLTLSRTELDRYLEASQIRERAIERTNNVVGTYNDMRLRVFSKYPEFFPEEVFNIESFKWSFAILFSRMVRLPSMNGKVALVPWSDMLNHNCEVETFLDYDRSSKGIVFTTGRPYLPGEQVFISYGNKSNGELLLSYGFVPKEGTNPSDSVELPLSLKKSDESYKEKLELLRKYGLSGSQCFPLRVTGWPLELVAYAYLVDLRYPEIEEQALQFILDSCESSISKYNKLLQASGSLDLDVTSPKQLIFNYIV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05228 337 ProSiteProfiles SET domain profile. 85 211 IPR001214 GO:0005515
Vifa3g05228 337 Pfam Rubisco LSMT substrate-binding 244 314 IPR015353 -
Vifa3g05228 337 Gene3D - 230 288 IPR036464 -
Vifa3g05228 337 Gene3D set domain protein methyltransferase, domain 1 18 225 - -
Vifa3g05228 337 SUPERFAMILY SET domain 78 228 IPR046341 -
Vifa3g05228 337 Pfam Splicing factor 3B subunit 1 4 44 IPR015016 -
Vifa3g05228 337 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 241 316 IPR036464 -
Vifa3g05228 337 SMART set_7 55 217 IPR001214 GO:0005515
Vifa3g05228 337 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 48 319 - -
Vifa3g05228 337 Pfam SET domain 137 211 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05228 Vifa-Chr3 1526854086 1526855522 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g05228 Rubis-subs-bind 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05228 - - cam:101500121 424.091