Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05226 ATGGGAGATACAGAGAGTTGCAACAATAGAGGCTTGAATATGAATTATGATGGTCGAATTCAGAGTCTGAAAATTGAAGTTTACAAGGACATTCTCACTCGACTCATGGAATTGAATGCTCCTGAGGTCACTCTTCCTCATTTTCAAGACGAACTTTGGCTTCACTTCAACACCCTTCCAACTAGGTATGCGCTGGAAATGAATGTTGAAAAGGCTCAAGATGTTCTTATGCATAAAAAGTTACAGAATATAGCACGGACTATTGCGACTAGACCTGCAATTGAAGTCCGTCTTGTCCCGGTTCGCTCTCCTTCTGGTGTGCATTCCAACCTACAAACACAAATCAGTTGCCAAGTCTCTGATTTTCCATGCAACATACCAATGCATGAAATCACAATTTCAACCAGCGATAAGCCAAAACTTTTCAGTCAGTTGACTACCTTACTCTCTGAGATTGGGCTGAACATTCAAGAAGCACACGCCTTTTCCACATTGGATGGATATTCATTGGATGTTTTTGTTGTTGATGGTTGGGCAGGCCAGGATACGGAGAGGCTAAAGCATGAAGTGACGAAGAAAATGCAGAAACTCGAGGAAAATCAATGGTTCCCCCTATCTCCTTTTCCCAAGGATATCGAGATAGTAAAACACATTCCAACAAAGAAAATTAAGAAACTCGAGAAGCAATCCTGGTGCAGTCTTCCCAAGGAGAAACTAGAGAAAATTGGGATGAACTGTAAACCCATCAGTAGAAATTATGTATGGGAAATTGATGCAAGCTGTTTAAGATATGCGAAGAAAATGGCCTCTGGATCAGTCAGTGATTTGTACAAAGGCACTTATATTAATCAAGATGTGGCCATCAAAGTCTTTAAGAATGGTAGTTTGAATGGAAATACACAGAGGGAGTTTTCTCAGGAAATCTTTATCCTGAGTAAAGTTCAGCACAAGAATGTTATCAAATTTATTGGTGCATGTACAAAACCAAACTTTCATCTTGTCACAGAATATATGTCTGGCGGAAATATGTATGACTTTCTGCATATACAGAAGACCGTACTTACTCTTCCTTCTTTGCTCAAAGTAGCAATTGATGTATCCCAAGGAGTGAATTATTTGCATCAAAACAACATTATACATCGAGACCTCAAAACTGCCAATCTTTTGATGGATGAGAAGGGGGTAGTTAAAATTGCGGATTTTGGTGTAGCCAGATTGCAAGATCAATCTGGTATCATGACTGCAGAAACTGGAACATACCGGTGGATGGCTCCAGAGGTTATTCAACATAAGCCATATAACCATAAAGCTGATGTTTTCAGCTTTGGGATTATCCTTTGGGAGCTGCTCACAAGAAAGCTTCCTTATGAAGATTTGTCCCCATTACAAGCAGCAGTTGGAGTAGTACATAAGGATCTTAGGCCTGAAATTCCAAGGGATGCTCATCCAAAGTTAGTGGAATTGCTTCACTGGTGTTGGCACAAAGATCCGTCTTTAAGGCCCGATTTCTCAGAAATTCTAAAGTTTCTACAGCACATGAACAACATGATTGCAGGGAAAAAGAAGGAAAAGAAGATGGGGATGATGGTTTCCCACAGAAGACACCACTGA 1611 0.4029 MGDTESCNNRGLNMNYDGRIQSLKIEVYKDILTRLMELNAPEVTLPHFQDELWLHFNTLPTRYALEMNVEKAQDVLMHKKLQNIARTIATRPAIEVRLVPVRSPSGVHSNLQTQISCQVSDFPCNIPMHEITISTSDKPKLFSQLTTLLSEIGLNIQEAHAFSTLDGYSLDVFVVDGWAGQDTERLKHEVTKKMQKLEENQWFPLSPFPKDIEIVKHIPTKKIKKLEKQSWCSLPKEKLEKIGMNCKPISRNYVWEIDASCLRYAKKMASGSVSDLYKGTYINQDVAIKVFKNGSLNGNTQREFSQEIFILSKVQHKNVIKFIGACTKPNFHLVTEYMSGGNMYDFLHIQKTVLTLPSLLKVAIDVSQGVNYLHQNNIIHRDLKTANLLMDEKGVVKIADFGVARLQDQSGIMTAETGTYRWMAPEVIQHKPYNHKADVFSFGIILWELLTRKLPYEDLSPLQAAVGVVHKDLRPEIPRDAHPKLVELLHWCWHKDPSLRPDFSEILKFLQHMNNMIAGKKKEKKMGMMVSHRRHH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05226 536 ProSiteProfiles Protein kinase domain profile. 262 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05226 536 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 153 518 - -
Vifa3g05226 536 SMART serkin_6 262 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05226 536 CDD STKc_MAP3K-like 268 510 - -
Vifa3g05226 536 Gene3D Transferase(Phosphotransferase) domain 1 340 535 - -
Vifa3g05226 536 SUPERFAMILY Protein kinase-like (PK-like) 245 510 IPR011009 -
Vifa3g05226 536 SUPERFAMILY ACT-like 129 198 IPR045865 -
Vifa3g05226 536 PRINTS Tyrosine kinase catalytic domain signature 418 428 IPR001245 GO:0004672|GO:0006468
Vifa3g05226 536 PRINTS Tyrosine kinase catalytic domain signature 335 348 IPR001245 GO:0004672|GO:0006468
Vifa3g05226 536 PRINTS Tyrosine kinase catalytic domain signature 372 390 IPR001245 GO:0004672|GO:0006468
Vifa3g05226 536 PRINTS Tyrosine kinase catalytic domain signature 481 503 IPR001245 GO:0004672|GO:0006468
Vifa3g05226 536 PRINTS Tyrosine kinase catalytic domain signature 437 459 IPR001245 GO:0004672|GO:0006468
Vifa3g05226 536 Pfam Protein tyrosine and serine/threonine kinase 263 510 IPR001245 GO:0004672|GO:0006468
Vifa3g05226 536 Gene3D Phosphorylase Kinase; domain 1 253 339 - -
Vifa3g05226 536 ProSiteProfiles ACT domain profile. 130 208 IPR002912 -
Vifa3g05226 536 Coils Coil 180 200 - -
Vifa3g05226 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 378 390 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05226 Vifa-Chr3 1526835601 1526842928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05226 5 536 MAP Kinase Kinase Kinase AT4G35780 48.542 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa3g05226 PK_Tyr_Ser-Thr 1.2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05226 - - gmx:100818047 619.772