Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05222 ATGTTGGATGCAGTTCTTCTGGCGCTATTCTTGCCGTGTCTCGGCATGAGCGCCATCTTCATAGTCTACATCTGTCTTCTCTGGTACGCCACTGCTCACCCAACAACCGGAATCATTACCAAACCGGTCATCAATACCGGTCTTTCCCCTTCTCAACTACAAAACCTACCCACTCTCACCGGTAAAGACCTCGTCGCTGCTCCCGAATGTGCCGTTTGTCTCGACGACATAAGCGAGGAACAATCCGCACGTGTCATTCCAGGTTGTAACCATGCTTTCCATTTGGAGTGTGCTGACACGTGGCTTTCTAAACATCCTCTGTGCCCTGTTTGTAGAGCCAAACTCGATCCTAAACTCTTCATTGATTCACCTCAAAATCAAAATCCTTGTTAA 393 0.4809 MLDAVLLALFLPCLGMSAIFIVYICLLWYATAHPTTGIITKPVINTGLSPSQLQNLPTLTGKDLVAAPECAVCLDDISEEQSARVIPGCNHAFHLECADTWLSKHPLCPVCRAKLDPKLFIDSPQNQNPC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05222 130 SMART ring_2 70 111 IPR001841 -
Vifa3g05222 130 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vifa3g05222 130 Pfam Ring finger domain 69 112 IPR001841 -
Vifa3g05222 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 118 IPR013083 -
Vifa3g05222 130 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 4 118 - -
Vifa3g05222 130 SUPERFAMILY RING/U-box 69 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05222 Vifa-Chr3 1525942212 1525942604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05222 1 130 C3H Transcription Factor Family AT5G42200 48.175 7.88e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05222 K19037 - gmx:100817919 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05222 3 1525942212 1525942604 Vifa3g05222 3 1525942212 1525942604 ECH