Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05221 ATGGAGAAGTTAATGAGGATGAAATTAGTCACAATTTTTCTGGTTTTATTTGGCAGAGTATCAAATATTGCAATTGCGCAAACTACCAATCCAGCATATCCTGCAGTGTTTGCTTTTGGTGACTCAATCTTTGATACAGGAAATAATAACAACCTTGCAACTCTATCTAAATGCAATAATCCTCCCTACGGAAGGGATTTCTATGGCGGACGACCTACCGGAAGATTCGGTAACGGCAGAGTTCTATCAGATTTGATAACGGCGTCTTTGGGAGTGAAAGATACGTTACCAGCATTCCTAAACCCGGATTTATCCGATAAAGATCTTCCTACTGGAGTATGCTTTGCATCAGGAGGTTCAGGGTTTGATGATTTGACTGCAAACTCGCAGGGAGGAGTTTTGACAATGGGCGCTCAACTGAATTTTTTCCAACAATACATAGCAAAGTTGAAAGCATCGGTTGGACCAGAAAAAGCTTCAGACATCATATCCAAAGCCTTGTTTATAATATCAGCAGGAAACAATGACGTTGCATTCGCTTATTCTTTCACTATTCGAAGAACTATGCCTTTTAATGTATATGCTAGTACTTTAGTTACAGCAGGCCAAAATTTCCTCAAGAGTTTATATCAACTGGGAGCACGACATGTGTGGGTTATGAGTACAATACCATTGGGATGCTTACCTGCAGCTAGAACTCAAGTGGGAGGACCATTAAGGTTATGTGTAGATTACGAGAATGGATTAGCACAAATGTACAATGGCATGTTATCAGCCGGAGTTTCGAGTCTTAAAGCCTCTCTTCCCGATTACGATCTTAAGTTCGTCGATGTTTATACTCCTATGCTTAATATCATACACAATCCTTCCGCATCAGGGTTTCAAAATGTGTGGAATGGTTGTTGTGGAACTGGAACATTTGAAATGGGAGCTCAATGCAACATGTTAACGTTCCAATGTCCAAGTACTGCAGCTTATTTTTTCTGGGATGTTGCTCATCCTACAGAAAGAGCTTATCAACTCACTGTTGCTCAAATACTACAAGCTCAAAACTATGATCTTACTAGTTACCATATTTCAAAAGCTCTTCATCCTTTGAATGTATCAAGTCTTAGTTTTAATAATTAA 1128 0.3927 MEKLMRMKLVTIFLVLFGRVSNIAIAQTTNPAYPAVFAFGDSIFDTGNNNNLATLSKCNNPPYGRDFYGGRPTGRFGNGRVLSDLITASLGVKDTLPAFLNPDLSDKDLPTGVCFASGGSGFDDLTANSQGGVLTMGAQLNFFQQYIAKLKASVGPEKASDIISKALFIISAGNNDVAFAYSFTIRRTMPFNVYASTLVTAGQNFLKSLYQLGARHVWVMSTIPLGCLPAARTQVGGPLRLCVDYENGLAQMYNGMLSAGVSSLKASLPDYDLKFVDVYTPMLNIIHNPSASGFQNVWNGCCGTGTFEMGAQCNMLTFQCPSTAAYFFWDVAHPTERAYQLTVAQILQAQNYDLTSYHISKALHPLNVSSLSFNN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05221 375 CDD SGNH_plant_lipase_like 34 349 IPR035669 -
Vifa3g05221 375 SUPERFAMILY SGNH hydrolase 114 348 - -
Vifa3g05221 375 Pfam GDSL-like Lipase/Acylhydrolase 36 342 IPR001087 GO:0016788
Vifa3g05221 375 PANTHER GDSL ESTERASE/LIPASE EXL3 16 345 - -
Vifa3g05221 375 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 36 47 IPR008265 GO:0006629|GO:0016298
Vifa3g05221 375 Gene3D SGNH hydrolase 23 352 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05221 Vifa-Chr3 1525396724 1525398207 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05221 10 348 Pollen Coat Proteome AT1G75910 42.486 3.61e-81 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05221 - - mtr:11422775 600.512