Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05220 ATGGCCACTCAAATGAGTAAGAAGAGAAAGTTTGTTGCAGATGGAGTTTTCTTTGCTGAATTGAACGAGGTTTTGACCCGTGAGCTTGCTGAAGATGGTTACTCTGGTGTTGAGGTTAGGGTTACCCCAATGCGCACTGAGATCATTATCAGAGCTACTCGCACCCAAGCTGTTCTAGGTGAGAAAGGGAGGAGGATTAGAGAACTGACCTCAGTTGTTCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAACTTTATGCTGAAAAGGTGAACAATAGAGGACTTTGTGCTATTGCTCAGGCTGAATCTCTACGTTACAAGCTCCTTGGTGGTCTTGCTGTGCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGTGCCAAGGGATGCGAGGTCATTGTCAGTGGAAAGTTGAGAGCCCAAAGAGCCAAGTCCATGAAATTCAAGGATGGATACATGATTTCTTCTGGGCAACCAGTCAAAGATTACATCGACTCTGCAGTTAGACATGTCCTCCTCAGACAGGGTGTTCTTGGTATCAAAGTAAAGATTATGCTTGATTGGGATCCTAAAGGGAAACAAGGTCCTAAAACCCCCCTCCCGGATATTGTCACCATCCACACTCCAAAGGAGGAGGAATACAACCCACCTCAGGAATACAGCCAGCCTCCTCCTGCTGTTTTAGCCTCTACCGATATTGAGGTGCCTGTTGCTTGA 729 0.4609 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEYNPPQEYSQPPPAVLASTDIEVPVA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05220 242 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Vifa3g05220 242 CDD KH-II_40S_S3 5 95 - -
Vifa3g05220 242 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 202 - -
Vifa3g05220 242 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Vifa3g05220 242 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Vifa3g05220 242 Gene3D - 1 91 IPR015946 -
Vifa3g05220 242 MobiDBLite consensus disorder prediction 213 242 - -
Vifa3g05220 242 Gene3D - 93 219 IPR036419 -
Vifa3g05220 242 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Vifa3g05220 242 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vifa3g05220 242 Pfam KH domain 20 93 IPR004044 GO:0003723
Vifa3g05220 242 FunFam 40S ribosomal protein S3 93 227 - -
Vifa3g05220 242 FunFam 40S ribosomal protein S3 1 92 - -
Vifa3g05220 242 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05220 Vifa-Chr3 1525350582 1525352647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05220 1 242 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.677 5.55e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05220 K02985 - gmx:100799156 442.195