Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05217 ATGGGTCGTGAAAGAATATCTATGGAACTGATTCCAAACTCGAAATCAAGAAAGACAACATTTGAGAAGAGAAAGAATGGCTTAATGAAAAAAGTGAGTGAACTTTCCATTCTTTGCGACGTTGATGTCTGCGTGATTCTCTATGCACCAAACTTTGAAGGTGAAGGATTTGCAGAACCTGAAACATGGCCTAAAGACACAAACCAGGTACGAAGAATTCTTCAAAAATACTATAACACAGCAATTGATAGACGTCCTAAGGTCTATAGTGTTCAAGAGTATTTCAAAGAAAGGTTGAAGAAAGTCGAGTTTGAGATTTCGAAAGTGCGAAAACAAAGGCTAAAGATCATGCATCGGAGTTGTAATGAAGATTATGATTCTCTTAGAGGGAATGAATTGAAGTTACTTATTAGCACATTGGATTCTAGGTTTGCTTCTTGCTGTCAAAAGATGGATATGCTTAAAGGAAAAGCGATTGTGGAGTCACAACCTAGTACTTCTTATTTGATCTCAAATCCAAGTAGTTACTTGAATCCTTTTCAAAGCAAAAACAGCATGCCTCAACCACAAATTTATCCTCCTTTGATGAATGTAAGTGATAAAACTCCAACGTTTTGGTCACTTCAAGTCGGACAAAGTTCACAACCTTCTTCGATTATTTCAAGTGCACAAGACTTTTATGAGACACTTCAATCAGGACAAAGTGTTGAACCTTTGTCGATGATGTCCAGTGCACAAGACTTTTATCAGACACTTCAATTAGGACAATGCTCTCAACCTACTTCGAGTGCACAAGACTTTTATCCATCACTTCAATTAGGACAAAGTGTTGAACCTTTGTCGATGATTCCTTTGTCAATGATTCCATGCGCACAAGCTTCTTATCCCTATGAACATATTGGTGCTAATGCCACCTATGATCATACTAAAGACAGTTATGGAGCTGGTCAAAACTTGTCACCCTACTATTATTACAAAGGGAACACATCAATGCAATCATATCCTCCTGTTAATATGCAAACTCTTCCTTTCCAGAATATTCCAAATCTACAAGGATATGGATTTCAGCATTATGGAATCACTGATATGGATGTTCTTCAAGCTGATATGTTCAACAACATGGATGAAAGGAATTAG 1137 0.372 MGRERISMELIPNSKSRKTTFEKRKNGLMKKVSELSILCDVDVCVILYAPNFEGEGFAEPETWPKDTNQVRRILQKYYNTAIDRRPKVYSVQEYFKERLKKVEFEISKVRKQRLKIMHRSCNEDYDSLRGNELKLLISTLDSRFASCCQKMDMLKGKAIVESQPSTSYLISNPSSYLNPFQSKNSMPQPQIYPPLMNVSDKTPTFWSLQVGQSSQPSSIISSAQDFYETLQSGQSVEPLSMMSSAQDFYQTLQLGQCSQPTSSAQDFYPSLQLGQSVEPLSMIPLSMIPCAQASYPYEHIGANATYDHTKDSYGAGQNLSPYYYYKGNTSMQSYPPVNMQTLPFQNIPNLQGYGFQHYGITDMDVLQADMFNNMDERN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05217 378 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa3g05217 378 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Vifa3g05217 378 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vifa3g05217 378 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Vifa3g05217 378 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa3g05217 378 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa3g05217 378 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa3g05217 378 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Vifa3g05217 378 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Vifa3g05217 378 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05217 Vifa-Chr3 1524347469 1524348605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05217 1 103 Type I MADS-box Gene Family AT5G55690 50.962 3.35e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa3g05217 SRF-TF 7.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05217 - - tpra:123913303 329.331