Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05214 ATGGAGTTCCCAACACATTCTTATCTATTTTCAACTGCTTTTCTCCGTTTCACAATATTTTTACTTGTTTTGTTGAAAACAAAAGCGGTTTTGAGACTGCCGCCAAATGTTTCGATTCCAGCCGTGTTTGTGTTTGGGGATTCAATCGTGGATACTGGAAATAACAACAACATGACAACACCTTCTCGCTGCAATTACCCTCCCTATGGCAAAGATTTTCAAGGAGGACTTCCAACCGGAAGATTTAGTAACGGAAAAGTTCCCTCGGATATTATAGTTGAAGAATTAGGAATTAAAGAGTATCTGCCAGCATATTTGGACCCAAATCTGCAGCCTAGTGAACTACTCACAGGTGTAAACTTTGCATCTGGTGGTGCAGGATATGATCCTATGACTTCACAATTAGAGGTAGCTATATCTATGTCTGGACAATTAGACTTATTCAAAGATTACATTGTGAAACTTAAAGGACTTGTTGGTGAAGATAGAACAAACTTTATCTTAGCCAATAGTCTATTTTTTGTGGTATTAGGAAGCAATGATATTTCTAACACATACTATTTGACTCATGTGAGACAAGTGGAATATGATTTTCCTACTTACTCTGACTTTTTAGTCAACTCAGCTTATAACTTCTACAAGGACATGTATGAGCTAGGTGCAAGGAGAATTGGAGTATTGAATGCACCACCAATGGGGTGTGTTCCATTTCAAAGAACAATGGCAGGAGGAATAGAAAGAAATTGTGTGAAACAATACAATGATGCATCTGTGTTCTTTAACAACAAGTTGTCACTTGGGATTGATTCCTTTAAGCTGAATTTTCCAAGCAGCAGAATTGTTTACATGGATGTTTACAGCCCTCTACTTGATATAATTCTAAACAATCAACAATATGGATATGAAGTGGGAAACAAAGGGTGTTGTGGCACAGGAACAATAGAAGTTACTTATTTATGTAACAGTTTGGATGTCACATGTTCCAATGATTTGGATTATGTGTTTTGGGACAGTTTCCACCCAACTGAATCTGTTTACAGAAAACTTGTTCCCCCTATTCTCCTCAAATACTTGAACAAGTTTATTTATTAG 1092 0.369 MEFPTHSYLFSTAFLRFTIFLLVLLKTKAVLRLPPNVSIPAVFVFGDSIVDTGNNNNMTTPSRCNYPPYGKDFQGGLPTGRFSNGKVPSDIIVEELGIKEYLPAYLDPNLQPSELLTGVNFASGGAGYDPMTSQLEVAISMSGQLDLFKDYIVKLKGLVGEDRTNFILANSLFFVVLGSNDISNTYYLTHVRQVEYDFPTYSDFLVNSAYNFYKDMYELGARRIGVLNAPPMGCVPFQRTMAGGIERNCVKQYNDASVFFNNKLSLGIDSFKLNFPSSRIVYMDVYSPLLDIILNNQQYGYEVGNKGCCGTGTIEVTYLCNSLDVTCSNDLDYVFWDSFHPTESVYRKLVPPILLKYLNKFIY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05214 363 CDD SGNH_plant_lipase_like 40 347 IPR035669 -
Vifa3g05214 363 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 42 53 IPR008265 GO:0006629|GO:0016298
Vifa3g05214 363 FunFam GDSL esterase/lipase APG 31 358 - -
Vifa3g05214 363 Gene3D SGNH hydrolase 33 354 IPR036514 -
Vifa3g05214 363 SUPERFAMILY SGNH hydrolase 41 353 - -
Vifa3g05214 363 PANTHER GDSL ESTERASE/LIPASE EXL3 21 350 - -
Vifa3g05214 363 Pfam GDSL-like Lipase/Acylhydrolase 42 349 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05214 Vifa-Chr3 1523726350 1523728280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05214 15 354 Pollen Coat Proteome AT1G75910 38.776 3.47e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05214 - - gmx:100786548 528.094