Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05212 ATGAAGAAAGTCGTTACTGATAACCCTAAAAAGCTCGCAAACTTGATCGATCTCGTTAACCTTCCTCCCACTCTCAGAGACTTCGTCGGTCAATCTCAGACTTCTCGATTAACCTGTTTCATGCGTGTTTGGTCCTACGTCAAAACAAACAATCTTCAGGATCCAAATAACAAGAACATGGTAAACTGTGATGAGAAGTTAAAAGGTATTTTACTCGGGAAACCTCGGGTTGAGTTAGCAGAACTTCCAGCACTTATCAAGCTACATTTTCTGAAAGAGCCCAACTTGTTCACATCACATAAAAAGTTTTCATGTGAAGCTGCGGTTGCATGGGAAGCTGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACCGCAAGCCGATGAAGTTCGTCTCAAGATACTCTTCACCTCCCTTTGTCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATCGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCTGTATTCACAGGGGAGTGTGGTGAATGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACTGACAGAGGTGTCATGCTCAATGATAACAAGTCTAGATTCTCTATCAATGGAGAGCCCATAAACCATTTCGTGGGCACCTCTACATTCAGTGAGTACACAGTGGTTCATGCTGGATGTGTTGCAAAGATCAATCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGAAAGTAGATTAA 1020 0.4441 MKKVVTDNPKKLANLIDLVNLPPTLRDFVGQSQTSRLTCFMRVWSYVKTNNLQDPNNKNMVNCDEKLKGILLGKPRVELAELPALIKLHFLKEPNLFTSHKKFSCEAAVAWEAGKPLVIEEVEVAPPQADEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSINGEPINHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCILSCLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKVD 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05212 339 SUPERFAMILY GroES-like 98 275 IPR011032 -
Vifa3g05212 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 263 337 IPR036291 -
Vifa3g05212 339 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 163 177 IPR002328 GO:0008270|GO:0016491
Vifa3g05212 339 SMART swib_2 15 95 IPR019835 -
Vifa3g05212 339 Gene3D - 273 337 - -
Vifa3g05212 339 FunFam S-(hydroxymethyl)glutathione dehydrogenase 272 339 - -
Vifa3g05212 339 Pfam Zinc-binding dehydrogenase 295 337 IPR013149 -
Vifa3g05212 339 SUPERFAMILY SWIB/MDM2 domain 11 98 IPR036885 -
Vifa3g05212 339 CDD SWIB-MDM2_like 19 90 - -
Vifa3g05212 339 Gene3D SWIB/MDM2 domain 14 97 IPR036885 -
Vifa3g05212 339 PANTHER ALCOHOL DEHYDROGENASE 101 337 - -
Vifa3g05212 339 Pfam SWIB/MDM2 domain 19 90 IPR003121 -
Vifa3g05212 339 FunFam alcohol dehydrogenase 1-like isoform X1 113 276 - -
Vifa3g05212 339 Gene3D - 113 272 - -
Vifa3g05212 339 Pfam Alcohol dehydrogenase GroES-like domain 130 257 IPR013154 -
Vifa3g05212 339 ProSiteProfiles SWIB/MDM2 domain profile. 14 92 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05212 Vifa-Chr3 1523671271 1523673692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05212 131 277 Monolignol Biosynthesis Gene Families AT4G37990 30.405 4.23e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa3g05212 ADH_N 4.7e-23 CL0296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05212 K18857 - gmx:100783858 433.721