Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05199 ATGGCGATGGTTGAAGAGGAACCCAAAGCTCTGAATTATATTCCAGAGGTTATATTGAAGAAGAGGAAAAACAGTGAAGCATGGGCTTTGAGAAAAAAGGACCAATTCCAGAAGAAAAGTTTCCAGCTCAGAAAATCCAAGGATTTCATCAAAAAGCCTGAGGATTTCATCTTTGAACATCGTAATAGAGAGATTGATCTTGTTAGGATGAAACGTAGGGTTAAGAGGAAGCGTGGTGAAAAAACTACCTCAATCAATAAGCCTATAATTGTTATTCGTATACAAGGGAAACAAGATATGCATCCTACAACTAGGAAGCACTTGTTTGATTTGGGATTGAGAAGAATTTTCAGTGCTGTTTTTTTGAAGCCTACTGATGGAGTTATGGCTAAGCTGGCTAGAGTTGAACCATATGTTACCTATGGATATCCGAATCTTAAAAGCATAAAGGATCTAATTTACAAGAAGGGAAATGCAAAATTAGATAAGCGAAAAGTTCCTTTGACAGATAATAACCTTATTGAGCAGGAATTAGGAAAGTTCGGTATTGTTTGCATAGAAGACATTGTGCATCAAATTGAGAATGTTGGTCCTCACTTTAAGGAAGTTGTCAGATTTATGTGGCCTTTTGAACTGAACAAGCCAGCAGATGGATTGAATGGATTGAAAAACCGATTCAAACATGGTGGGGATTCAGGGGACCGTGAAGATCTCATCAACGAGCTCATCAATAAGATGAATTAA 744 0.375 MAMVEEEPKALNYIPEVILKKRKNSEAWALRKKDQFQKKSFQLRKSKDFIKKPEDFIFEHRNREIDLVRMKRRVKRKRGEKTTSINKPIIVIRIQGKQDMHPTTRKHLFDLGLRRIFSAVFLKPTDGVMAKLARVEPYVTYGYPNLKSIKDLIYKKGNAKLDKRKVPLTDNNLIEQELGKFGIVCIEDIVHQIENVGPHFKEVVRFMWPFELNKPADGLNGLKNRFKHGGDSGDREDLINELINKMN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05199 247 Gene3D - 89 247 IPR036919 -
Vifa3g05199 247 CDD Ribosomal_L7_archeal_euk 89 247 IPR035808 -
Vifa3g05199 247 PANTHER 60S RIBOSOMAL PROTEIN L7 11 247 IPR039699 -
Vifa3g05199 247 FunFam 60S ribosomal protein L7 89 194 - -
Vifa3g05199 247 SUPERFAMILY Ribosomal protein L30p/L7e 90 247 IPR036919 -
Vifa3g05199 247 Pfam Ribosomal L30 N-terminal domain 14 78 IPR012988 -
Vifa3g05199 247 NCBIfam 60S ribosomal protein uL30 15 247 IPR005998 GO:0000463|GO:0003735|GO:0022625
Vifa3g05199 247 Pfam Ribosomal protein L30p/L7e 90 139 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05199 Vifa-Chr3 1519748765 1519750278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05199 3 247 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 52.632 5.79e-84 249