Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05191 ATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCGCAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTGGATATAATTAGAGCCAGAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCGTTGTTATTCGTCACTCACGCGAATGACATAGAGGCTTTGAAAAAAGTCGTTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAACTCTAGATATCATAGATTTGAAACAAAATGGTGAAGATGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAACTACTAAAGGAAGGGAATTACGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAGACATGAAACAGCACTTTTACTTGCAAGAGAAAAAAATTTGAAAGGAAATGATGCAGAGAATGTGATCATGGATGAGTTAGCTAGAAGAGTAGTATTGTGCGGTGCGCGTGTGAAGAAACATACAAAATGTGGTAAAGGACTTTCATGA 954 0.3753 MAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTATSIHWTKEYQKAVLDIIRARKVVKSSNASRFSSLLFVTHANDIEALKKVVENRNINLDEQNESGFSAVMISASEGSVEAFKLLLHAGADVTNLKNKDGLTTLDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINMVEKLLKEGNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNERHETALLLAREKNLKGNDAENVIMDELARRVVLCGARVKKHTKCGKGLS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05191 317 ProSiteProfiles Ankyrin repeat region circular profile. 131 158 - -
Vifa3g05191 317 ProSiteProfiles Ankyrin repeat profile. 27 59 IPR002110 GO:0005515
Vifa3g05191 317 ProSiteProfiles Ankyrin repeat region circular profile. 236 268 - -
Vifa3g05191 317 Pfam Ankyrin repeats (3 copies) 186 267 IPR002110 GO:0005515
Vifa3g05191 317 Coils Coil 111 131 - -
Vifa3g05191 317 Pfam Ankyrin repeat 132 163 IPR002110 GO:0005515
Vifa3g05191 317 Pfam Ankyrin repeat 28 58 IPR002110 GO:0005515
Vifa3g05191 317 ProSiteProfiles Ankyrin repeat profile. 131 163 IPR002110 GO:0005515
Vifa3g05191 317 ProSiteProfiles Ankyrin repeat profile. 236 268 IPR002110 GO:0005515
Vifa3g05191 317 SMART ANK_2a 202 232 IPR002110 GO:0005515
Vifa3g05191 317 SMART ANK_2a 236 265 IPR002110 GO:0005515
Vifa3g05191 317 SMART ANK_2a 131 160 IPR002110 GO:0005515
Vifa3g05191 317 SMART ANK_2a 27 56 IPR002110 GO:0005515
Vifa3g05191 317 SUPERFAMILY Ankyrin repeat 2 282 IPR036770 -
Vifa3g05191 317 Gene3D - 179 285 IPR036770 -
Vifa3g05191 317 PANTHER ANKYRIN REPEAT-CONTAINING 1 310 - -
Vifa3g05191 317 Gene3D - 1 77 IPR036770 -
Vifa3g05191 317 Gene3D - 78 178 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05191 Vifa-Chr3 1516382752 1516383705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05191 121 259 Ion Channels AT2G25600 30.120 3.15e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05191 - - mtr:11444172 496.508