Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05180 ATGGACATGGAGCTCGATCAAACTTCCCACCACAACAAAGATGGAAAACCCGTTTTGGTAATCTTAGTTGGACCGCCTGGCAGCGGAAAATCCACCTTCTGTGAAGAGGTTATGCGTTCCTCTTCTCGCTCTTGGGTTCGCGTCTGTCAGGACACTATTGGAAATGGTAAAGCAGGAACTAAAGCTCAATGTCTAACTAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTCATTGACAGGTGCAATCTTAACAGAGAACAGCGATCAGATTTTGTAAAGCTTCAGGGTGAAACCCAAATAGATATGCATGCACTTGTACTTGACCTTCCTGCCAAGCTTTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAGTAAAGAGCTGCCCAAGTTAAGTGAAGGCTTTAACAGAATAACATTTTGTCAGAGTGAGAGTAATGTCAAAGATGCGGTTGATACATACCAAAAACTCGGGCCACTGGATAACCTTTCACATGGCTGCTTTGGTCAGAAAAATCCAGATTCCAAAATTCAATCTAGTATAATGAAATTCCTGAAAAAGGTAGAGGTCCCGGTTGATACTGCATCTAAAGAAAATGGCATTAGAGACTCTACTTCCAAAACTCCTGGGAAGAGTGATCCCCTCTGCAAAGATATGGAAAAAATCCCATCAGCACATAACAATTCCGAGTTAGGGTCAAAGGACATTGAAGGCAAGGCTGATAAATCTTCCAGTTCCTGTCACAATCAAGTTTCTCTGGATGATACTCCAACTCTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACCATGACAAGGCAGCTGATATTATTGTTGAGAAGGTCGCAGAATACTCAAATAAGGTAGGGAATGCCAGACTTGTTCTAGTTGACTTGACACACAAGTCAAAGATTTTGTCCTTAGTTAAATCCAAAGCCGCAGAAAAGAAAATTGACACCCAAAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTTATTCCACAGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAACTGGAGGCTAAAACCTGGTGGTGGAGGTGTTAATGCATCAATTTTTGATGCCGCAGGTCCTGAACTGGAGTCTGCAACCAAAGACAAAGTAAAGACTCTTTCACCTGGGAATGCTGTTGCTGTCCCTCTACCTTCATCTTCTCCTTTGTTCACAAGGGAAGGTGTGACCCATGTAATACATGTCCTTGGCCCTAATATGAATCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAAAGGCTGCAAAGTTCTCCAAGATGCTTATGCATCGCTATTTGAAGGTTTTGCATCAATTGTTAAGAACCAGGTACAGCAAAATGAAAACCTTGGGAAAAAGTCTCTGGAATTGCAGGATCAGTCTGAACAGAGTTCCAGAAATCATTCCCCAAATACTGATCAAAAGAGTAAGAGAGATGCTGATCATGGATTGGAAAAAAGCAAGAAATACAAGGGAAGTCAAGATGGTTTTGGCACAACTTTTACAGGTTCTAGGGATGAAAAGGTAGATTCAGAGCATAAAAGAAGCGACGGGAGCACGAGGAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCAAATAGCTATCCATCCTGAAAAGCATAAGGATGACTTGCTTGAAATTTCAGAAGACATTGTTGTTTTGAACGATGTGTATCCTAAGGCACAGAAGCATGTTCTGGTCTTGGCACGGACTAGAGGTCTTGATTGCCTTTCAGACGTCCAAAACGAGCACCTTTCGGTATTGAAAAGGTTGCATGCAGTTGGTTTAAAATGGGCTGAGAAATTCTTGAGCGAGAATGCTTCATTGGTATTTCGCCTTGGATATCACTCGGTTCCGTCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTTGAATCAAAACATTTGAAGAATAAGAAGCATTGGAACTCGTTTAACACTGCTTTCTTTCGCGACTCGGTGGATGTAATTGATGATGTATCTAATAATGGAAAAGCAACACTGAAAGATGACGACAAGCTACTGTCTATGGAGTTGAGGTGCCACAGATGTAAAAGTGCGCATCCGAATATACCCCGCTTAAAATCACATATTAGTAGCTGCCAATCACCCTTTCCTGCTTACCTACTAAAAAACGAGCGTTTGGTTGGTGCATGA 2259 0.4197 MDMELDQTSHHNKDGKPVLVILVGPPGSGKSTFCEEVMRSSSRSWVRVCQDTIGNGKAGTKAQCLTSAARALKDGKSVFIDRCNLNREQRSDFVKLQGETQIDMHALVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQSKELPKLSEGFNRITFCQSESNVKDAVDTYQKLGPLDNLSHGCFGQKNPDSKIQSSIMKFLKKVEVPVDTASKENGIRDSTSKTPGKSDPLCKDMEKIPSAHNNSELGSKDIEGKADKSSSSCHNQVSLDDTPTLAFPSISTSDFQFNHDKAADIIVEKVAEYSNKVGNARLVLVDLTHKSKILSLVKSKAAEKKIDTQKFFTHVGDITRLYSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKDKVKTLSPGNAVAVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYEKGCKVLQDAYASLFEGFASIVKNQVQQNENLGKKSLELQDQSEQSSRNHSPNTDQKSKRDADHGLEKSKKYKGSQDGFGTTFTGSRDEKVDSEHKRSDGSTRKAWGSWAQALHQIAIHPEKHKDDLLEISEDIVVLNDVYPKAQKHVLVLARTRGLDCLSDVQNEHLSVLKRLHAVGLKWAEKFLSENASLVFRLGYHSVPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDVIDDVSNNGKATLKDDDKLLSMELRCHRCKSAHPNIPRLKSHISSCQSPFPAYLLKNERLVGA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05180 752 SUPERFAMILY HIT-like 553 719 IPR036265 -
Vifa3g05180 752 MobiDBLite consensus disorder prediction 215 271 - -
Vifa3g05180 752 ProSiteProfiles Macro domain profile. 332 598 IPR002589 -
Vifa3g05180 752 FunFam Transcription factor bHLH140 325 472 - -
Vifa3g05180 752 Gene3D - 557 738 IPR036265 -
Vifa3g05180 752 PANTHER APRATAXIN-RELATED 279 735 - -
Vifa3g05180 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 162 IPR027417 -
Vifa3g05180 752 FunFam Transcription factor bHLH140 6 176 - -
Vifa3g05180 752 MobiDBLite consensus disorder prediction 487 553 - -
Vifa3g05180 752 MobiDBLite consensus disorder prediction 536 551 - -
Vifa3g05180 752 Pfam C2HE / C2H2 / C2HC zinc-binding finger 680 733 IPR032566 -
Vifa3g05180 752 ProSitePatterns HIT domain signature. 644 662 IPR019808 -
Vifa3g05180 752 SUPERFAMILY Macro domain-like 325 465 IPR043472 -
Vifa3g05180 752 Gene3D - 2 176 IPR027417 -
Vifa3g05180 752 Gene3D Leucine Aminopeptidase, subunit E, domain 1 243 319 IPR043472 -
Vifa3g05180 752 Pfam AAA domain 19 146 - -
Vifa3g05180 752 MobiDBLite consensus disorder prediction 487 501 - -
Vifa3g05180 752 FunFam aprataxin isoform X2 556 736 - -
Vifa3g05180 752 SMART YBR022w_8 344 496 IPR002589 -
Vifa3g05180 752 MobiDBLite consensus disorder prediction 502 523 - -
Vifa3g05180 752 Pfam Macro domain 367 447 IPR002589 -
Vifa3g05180 752 Gene3D Leucine Aminopeptidase, subunit E, domain 1 320 471 IPR043472 -
Vifa3g05180 752 Pfam Scavenger mRNA decapping enzyme C-term binding 563 675 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05180 15 751 C2H2 Transcription Factor Family AT5G01310 58.073 0.0 856
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05180 K10863 - gmx:100786762 1149.81