Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05171 ATGTCTGCCAAATGCAGTAAAATCCGCCACATTGTACGCCTCCGCCAGATGCTACGCCGGTGGCGAAACAAAGCACGCATGTCATCAGCTAATCGTGCGCCGTCGGATGTCCCAGCGGGACACGTGGCAGTCTGCGTCGGAACAAACTACACCAGATTTATCATGCGCGCGACGTACCTGAACCACCCCATTTTCCAGAAGCTTCTCGTTCAAGCAGAAGAAGAATACGGTTTCTCTAACCACGGACCTCTCACCATCCCCTGCGATGAAGAATTCTTCGAAGAAGCTCTCCGGTTCATTTCCCGCTCTAACAACGGATCGAACCGGTTCGTTAATCTCGAGTTTGAAGATTTTCAACAACGCTGCCACGTCGGAATTAGAACTACCGTGGATTTTTGGCCTGAATCTCGACCGCTCCTCCATGGTCTTAGTGACAAAAATATTTGGTAG 450 0.5044 MSAKCSKIRHIVRLRQMLRRWRNKARMSSANRAPSDVPAGHVAVCVGTNYTRFIMRATYLNHPIFQKLLVQAEEEYGFSNHGPLTIPCDEEFFEEALRFISRSNNGSNRFVNLEFEDFQQRCHVGIRTTVDFWPESRPLLHGLSDKNIW 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05171 149 Pfam Auxin responsive protein 13 99 IPR003676 GO:0009733
Vifa3g05171 149 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 97 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05171 Vifa-Chr3 1511055931 1511056380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05171 3 148 Calmodulin-binding Proteins AT4G34750 48.026 3.18e-45 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05171 K14488 - cave:132190292 243.047