Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05165 ATGAGCTGGCCTATTGATTCATGTCTTATCAACTTAACAAGCTTTTATCCTGTGCTGGTTGATATTGTAAAATCGGTACAAAAAAAAGGCTTGAAGGGTAAACTGGGAGGCTGGAAAGAATTCTTGAACATTCATGATAAGAAATTTGGGGCAACTATGAGTGATCCATCCAGGAGGTCCCATGAGGATTTGGCTGAATTTCTCAAGACATTCTCAAAGGATGATGATTTAAAGTATTTTGATAACATCATGCGCCGTCATTCGAATCAATACACCGTAGAGCGACTTAAAGATAGATCTCATCATTCCCCCGAGCAGAGTTTAGTCCAAGCAACTATTCAGCACCCGGATTACCCAAAGGAATACTCATTCCCACGTATTGACGAGGGATGGTTAGTGATAACCCTTAAAAAAAAGGCCAAGGGGATAAAATCTACTGCAATGCTTGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACTGAAGCTTTAGTCAAAGTTTGTGTCGTAGATCACAATTTAGAGGTCAAACTACTCGAACTTGTTAAACCGGAGAAAGCAATCGCAGAGTACAGAACAGAGATTACTGGTGTCTCTTCTAAAGATCTAGAGACAGTGACTTGCTCCTTAGCTGATATACAAAAATCGTTGAAGAAGCTTTTATCCAGTGGAGCCATATTAGTGGGACACAGTTTACATAATGATCTAGGTGTGCTGAAGCTAGATTATCCTAGAGTGGTCGACACTGCATACATCTTCCAACCCATGGATGGATCTACTTACAGGAAACATTCTTTAAATAGTTTGTGTCAGGCTGTGTTAGGCCACGAAGTTCGGAAAGAGGGTGCTTCACATAATTGTCAAGACGATGCATGTGCGACAATGAAACTTGTTCTTGCAAAGATCAAGCATGGTGTTGATAAGCCATTTCCGTTAACATTGGTTCAGGAGCCTGTTTCAGAAAGTGAGATGTCGAAGCTGCTTATTCACAGAATACCAACCACTGTGAACAGTGAAACACTACACGAAATTGTTCCTGGAGACTTCACAATAGAACAAAAGCCTGCCAGGAATGGTCAAGTAGACAAGTATTCTGCCTTAGCTATCTTTAAGAACCAACGAGAGGCACATGAGGCATATGAAAATGTCCAAGGCAGCCAAGGAACGGATTCAAGTCGGCGTCTACAGAAACTTGTAAAATGTCGGTTGAGTACGGGCGAAAGTGTAAGTATATATGTTCGGAAAATGGGAGTTGATAATCATCGCATAAAGAGAGAATTACAAGAGGACGAGACACTTGACTCATCCAAGAACAAAAAATTAAAAATGGATCAAGTTGAAAAGGATTATGCCCTGGAAGCTTTACAAGTGAAACATGAACTTGAAAAGAAGGCCCATTTGAAAAAGATAGAAGCACTGAATCAACTTTTGAAAGAAAGTGAATCAGAGCACTTGAAGGAGATTGACGCATTGAATAAACGATTGAAAGAAAGTGAATTGGAGATTGAATCAATGAAGGAACAATTGCTGACTCAACGATCAAAGGAAAGTGAGTTGGAGATTGAAACAATGAAGGAGCAGTTGAGAAAAAAGGACTTTGAAATCAACACTCTGCATAAAATGGTGGATAACATTCAAAAAAGGCGAAAACTATCTACAAAAAAAGTAGGCACGGGGATTTGA 1686 0.398 MSWPIDSCLINLTSFYPVLVDIVKSVQKKGLKGKLGGWKEFLNIHDKKFGATMSDPSRRSHEDLAEFLKTFSKDDDLKYFDNIMRRHSNQYTVERLKDRSHHSPEQSLVQATIQHPDYPKEYSFPRIDEGWLVITLKKKAKGIKSTAMLAVDCEMVLCEDGTEALVKVCVVDHNLEVKLLELVKPEKAIAEYRTEITGVSSKDLETVTCSLADIQKSLKKLLSSGAILVGHSLHNDLGVLKLDYPRVVDTAYIFQPMDGSTYRKHSLNSLCQAVLGHEVRKEGASHNCQDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSESEMSKLLIHRIPTTVNSETLHEIVPGDFTIEQKPARNGQVDKYSALAIFKNQREAHEAYENVQGSQGTDSSRRLQKLVKCRLSTGESVSIYVRKMGVDNHRIKRELQEDETLDSSKNKKLKMDQVEKDYALEALQVKHELEKKAHLKKIEALNQLLKESESEHLKEIDALNKRLKESELEIESMKEQLLTQRSKESELEIETMKEQLRKKDFEINTLHKMVDNIQKRRKLSTKKVGTGI 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05165 561 FunFam Small RNA degrading nuclease 3 143 317 - -
Vifa3g05165 561 Gene3D - 143 311 IPR036397 GO:0003676
Vifa3g05165 561 Coils Coil 464 528 - -
Vifa3g05165 561 CDD REX1_like 149 300 IPR034922 -
Vifa3g05165 561 SUPERFAMILY Ribonuclease H-like 149 304 IPR012337 -
Vifa3g05165 561 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 20 317 IPR047021 GO:0004527
Vifa3g05165 561 SMART exoiiiendus 147 308 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05165 Vifa-Chr3 1507221158 1507226009 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05165 124 314 C2H2 Transcription Factor Family AT3G27970 28.959 6.53e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05165 K14570 - gmx:100785565 604.749