Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05162 ATGGATAACAAGTTTGACACAGCGGAAAAGAAGGTGCTGGTTGATATTGTAAAATCGGTACAAAAAAAAGGCTTGAAGGGTAAACTGGGAGGCTGGAAAGAATTCTTGAACATTCATGATAAGAAATTTGGGGCAACTATGAGTGATCCATCCAGGAGGTCCCATGAGGATTTGGCTGAATTTCTCAAGACATTCTCAAAGGATGATGATTTAAAGTATTTTGATAACATCATGCGCCGTCATTCAAATCAATACACCGTAGAGCGACTTAAAGATAGATCTCATCATTCCCCCGAGCAGAGTTTAGTCCAAGCAACTATTCAGCACCCGGAGTACCCAAAGGAATACTCATTCCCACGTATTGACGAGGGATGGTTAGTGATAACCCTTAAAAAAAAGGCCAAGGGGATAAAATCTACTGCAATGCTTGCTGTTGATTGTGAAATGGTTCTTTGTGAAGATGGGACTGAAGCTTTAGTCAAAGTTTGTGTCGTAGATCACAATTTAGAGGTCAAACTACTCGAACTTGTTAAACCGGAGAAAGCAATCGCAGAGTACAGAACAGAGATTACTGGTGTCTCTTCTAAAGATCTAGAGACCGTGACTCGCTCCTTAGCTGATATACAAAAATCGTTGAAGAAGCTTTTATCCAGTGGAGCCATATTAGTGGGACACAGTTTACATAATGATCTAGGTGTGCTGAAGCTAGATTATCCTAGAGTGGTCGACACTGCATACATCTTCCAACCCATGGATGGATCTACTTACAGGAAACATTCTTTAAATAGTTTGTGTCAGGCTGTGTTAGGCCACGGAGTTCGGAAAGAGGGTGCTTCACATAATTGTCAAGACGATGCATGTGCGACAATGAAACTTGTTCTTGCAAAGATCAAGCATGGTGTTGATAAGCCATTTCCGTTAACATTGGTTCAAGAGCCTGTTTCAGAAAGTGAGATGTCGAAGCTGCTTATTCACAGAATACCAACCACTGTGAACAGTGAAACACTACACGAAATTGTTCCTGGAGACTTCACAATAGAACAAAAGCCTGCCAGGAATGGTCAAGTAGACAAGTATTCTGCCTTAGCTATCTTTAAGAACCAACGAGAGGCACATGAGGCATATGAAAATGTCCAAGGCAGCCAAGGAACGGATTCAAATGGGCGTCTACAGAAACTTGTAAAATGTCGGTTGAGTACGGGCGAAAGTGTAAGTATATATGTTCGGAAAATGGGAGTTGATAATCACCACATAAAGAGAGATTTACAAGAGGACGAGACACTTGACTCATCCAAGAACAAAAAATTAAAAATGGATCAAGTTGAAGAGGATTATGCTCTGAAAGCTTTACAAGTGAAACATGAACTTGAAAAGAAGGCCCATTTGAAAAAGATAGAAGCACTGAATCAACTTTTGAAAGAAAGTGAATCAAAGCACTTGAAGGAGATTGACGCATTGAATAAACAATTGAAAGAAAGTGAATTGGAGATTGAATCGATGAAGGAACAATTGCTGAATCAACGATCAAAGGAAAGTGAGTTGGAGATTGAAACAATGAAGGAGCAGTTGAGAAAAAAGGACTTTGAGATCAACACTCTACATAAAATGGTAGATACCATTCAAAAAAGGCGAAAACTATCTACAAAAAAATTAGGCACGGGGATTTGA 1668 0.3975 MDNKFDTAEKKVLVDIVKSVQKKGLKGKLGGWKEFLNIHDKKFGATMSDPSRRSHEDLAEFLKTFSKDDDLKYFDNIMRRHSNQYTVERLKDRSHHSPEQSLVQATIQHPEYPKEYSFPRIDEGWLVITLKKKAKGIKSTAMLAVDCEMVLCEDGTEALVKVCVVDHNLEVKLLELVKPEKAIAEYRTEITGVSSKDLETVTRSLADIQKSLKKLLSSGAILVGHSLHNDLGVLKLDYPRVVDTAYIFQPMDGSTYRKHSLNSLCQAVLGHGVRKEGASHNCQDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSESEMSKLLIHRIPTTVNSETLHEIVPGDFTIEQKPARNGQVDKYSALAIFKNQREAHEAYENVQGSQGTDSNGRLQKLVKCRLSTGESVSIYVRKMGVDNHHIKRDLQEDETLDSSKNKKLKMDQVEEDYALKALQVKHELEKKAHLKKIEALNQLLKESESKHLKEIDALNKQLKESELEIESMKEQLLNQRSKESELEIETMKEQLRKKDFEINTLHKMVDTIQKRRKLSTKKLGTGI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05162 555 SUPERFAMILY Ribonuclease H-like 143 298 IPR012337 -
Vifa3g05162 555 Coils Coil 458 522 - -
Vifa3g05162 555 CDD REX1_like 143 294 IPR034922 -
Vifa3g05162 555 Gene3D - 137 305 IPR036397 GO:0003676
Vifa3g05162 555 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 311 IPR047021 GO:0004527
Vifa3g05162 555 SMART exoiiiendus 141 302 IPR013520 -
Vifa3g05162 555 FunFam Small RNA degrading nuclease 3 137 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05162 Vifa-Chr3 1507204965 1507214608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05162 118 308 C2H2 Transcription Factor Family AT3G27970 28.959 2.08e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05162 K14570 - gmx:100785565 616.69